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qigongFDAqigongFDA
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Add imagescope arrow annotation file
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‎src/exportXML_arrow.m‎

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function success = exportXML_arrow(fullname,scan_scale, task_id,workdir,Left, Top, roi_w, roi_h)
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%EXPORTXML Summary of this function goes here
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% process data
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try
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success = 0;
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length = 2*(roi_w + roi_h);
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lengthM = length*scan_scale;
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area= roi_w* roi_h;
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areaM= area * scan_scale *scan_scale;
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x1 = Left;
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y1 = Top;
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x2 = Left + roi_w;
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y2 = Top;
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x3 = Left + roi_w;
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y3 = Top + roi_h;
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x4 = Left;
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y4 = Top + roi_h;
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lengthArrow = 100;
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lengthArrowM = lengthArrow*scan_scale;
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xArrow1 = Left + ceil(roi_w/2)-30;
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xArrow2 = xArrow1 - lengthArrow;
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yArrow = Top + ceil(roi_h/2);
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indexdot = findstr(fullname, '.');
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imageDir = fullname(1:(indexdot(end)-1));
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filename = [imageDir,'.xml'];
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% generate xml
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% annotation information
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docNode = com.mathworks.xml.XMLUtils.createDocument('Annotations');
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docRootNode = docNode.getDocumentElement;
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docRootNode.setAttribute('MicronsPerPixel','0.2279');
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% image information
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entry_level_info = docNode.createElement('Image_information');
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entry_level_info.setAttribute('Full_path',fullname);
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docNode.getDocumentElement.appendChild(entry_level_info);
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entry_level1 = docNode.createElement('Annotation');
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entry_level1.setAttribute('MacroName','');
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entry_level1.setAttribute('MarkupImagePath','');
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entry_level1.setAttribute('Selected','1');
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entry_level1.setAttribute('Visible','1');
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entry_level1.setAttribute('LineColor','65280');
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entry_level1.setAttribute('Type','4');
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entry_level1.setAttribute('Incremental','0');
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entry_level1.setAttribute('LineColorReadOnly','0');
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entry_level1.setAttribute('NameReadOnly','0');
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entry_level1.setAttribute('ReadOnly','0');
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entry_level1.setAttribute('Name','');
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entry_level1.setAttribute('Id','1');
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docNode.getDocumentElement.appendChild(entry_level1);
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entry_level1_1 = docNode.createElement('Attributes');
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entry_level1.appendChild(entry_level1_1);
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entry_level1_1_1 = docNode.createElement('Attribute');
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entry_level1_1_1.setAttribute('Name','Description');
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entry_level1_1_1.setAttribute('Id','0');
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entry_level1_1_1.setAttribute('Value','');
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entry_level1_1.appendChild(entry_level1_1_1);
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entry_level1_2 = docNode.createElement('Regions');
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entry_level1.appendChild(entry_level1_2);
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entry_level1_2_1 = docNode.createElement('RegionAttributeHeaders');
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entry_level1_2.appendChild(entry_level1_2_1);
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entry_level1_2_1_1 = docNode.createElement('AttributeHeaders');
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entry_level1_2_1_1.setAttribute('Name','Region');
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entry_level1_2_1_1.setAttribute('Id','9999');
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entry_level1_2_1_1.setAttribute('ColumunWidth','-1');
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entry_level1_2_1.appendChild(entry_level1_2_1_1);
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entry_level1_2_1_2 = docNode.createElement('AttributeHeaders');
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entry_level1_2_1_2.setAttribute('Name','Length');
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entry_level1_2_1_2.setAttribute('Id','9997');
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entry_level1_2_1_2.setAttribute('ColumunWidth','-1');
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entry_level1_2_1.appendChild(entry_level1_2_1_2);
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entry_level1_2_1_3 = docNode.createElement('AttributeHeaders');
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entry_level1_2_1_3.setAttribute('Name','Area');
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entry_level1_2_1_3.setAttribute('Id','9996');
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entry_level1_2_1_3.setAttribute('ColumunWidth','-1');
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entry_level1_2_1.appendChild(entry_level1_2_1_3);
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entry_level1_2_1_4 = docNode.createElement('AttributeHeaders');
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entry_level1_2_1_4.setAttribute('Name','Text');
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entry_level1_2_1_4.setAttribute('Id','9998');
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entry_level1_2_1_4.setAttribute('ColumunWidth','-1');
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entry_level1_2_1.appendChild(entry_level1_2_1_4);
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entry_level1_2_1_5 = docNode.createElement('AttributeHeaders');
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entry_level1_2_1_5.setAttribute('Name','Description');
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entry_level1_2_1_5.setAttribute('Id','1');
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entry_level1_2_1_5.setAttribute('ColumunWidth','-1');
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entry_level1_2_1.appendChild(entry_level1_2_1_5);
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% boundary
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entry_level1_2_2 = docNode.createElement('Region');
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entry_level1_2.appendChild(entry_level1_2_2);
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entry_level1_2_2.setAttribute('Selected','1');
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entry_level1_2_2.setAttribute('Type','1');
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entry_level1_2_2.setAttribute('Id','1');
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entry_level1_2_2.setAttribute('DisplayId','1');
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entry_level1_2_2.setAttribute('Analyze','1');
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entry_level1_2_2.setAttribute('InputRegionId','0');
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entry_level1_2_2.setAttribute('NegativeROA','0');
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entry_level1_2_2.setAttribute('Text','');
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entry_level1_2_2.setAttribute('AreaMicrons',num2str(areaM));
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entry_level1_2_2.setAttribute('LengthMicrons',num2str(lengthM));
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entry_level1_2_2.setAttribute('Area',num2str(area));
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entry_level1_2_2.setAttribute('Length',num2str(length));
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entry_level1_2_2.setAttribute('ImageFocus','0');
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entry_level1_2_2.setAttribute('ImageLocation','');
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entry_level1_2_2.setAttribute('Zoom','0.022562');
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entry_level1_2_2_1 = docNode.createElement('Attributes');
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entry_level1_2_2.appendChild(entry_level1_2_2_1);
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entry_level1_2_2_2 = docNode.createElement('Vertices');
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entry_level1_2_2.appendChild(entry_level1_2_2_2);
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entry_level1_2_2_2_1 = docNode.createElement('Vertex');
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entry_level1_2_2_2.appendChild(entry_level1_2_2_2_1);
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entry_level1_2_2_2_1.setAttribute('Y',num2str(y1));
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entry_level1_2_2_2_1.setAttribute('X',num2str(x1));
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entry_level1_2_2_2_2 = docNode.createElement('Vertex');
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entry_level1_2_2_2.appendChild(entry_level1_2_2_2_2);
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entry_level1_2_2_2_2.setAttribute('Y',num2str(y2));
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entry_level1_2_2_2_2.setAttribute('X',num2str(x2));
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entry_level1_2_2_2_3 = docNode.createElement('Vertex');
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entry_level1_2_2_2.appendChild(entry_level1_2_2_2_3);
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entry_level1_2_2_2_3.setAttribute('Y',num2str(y3));
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entry_level1_2_2_2_3.setAttribute('X',num2str(x3));
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entry_level1_2_2_2_4 = docNode.createElement('Vertex');
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entry_level1_2_2_2.appendChild(entry_level1_2_2_2_4);
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entry_level1_2_2_2_4.setAttribute('Y',num2str(y4));
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entry_level1_2_2_2_4.setAttribute('X',num2str(x4));
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% arrow
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entry_level1_2_3 = docNode.createElement('Region');
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entry_level1_2.appendChild(entry_level1_2_3);
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entry_level1_2_3.setAttribute('Selected','1');
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entry_level1_2_3.setAttribute('Type','3');
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entry_level1_2_3.setAttribute('Id','1');
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entry_level1_2_3.setAttribute('DisplayId','1');
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entry_level1_2_3.setAttribute('Analyze','1');
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entry_level1_2_3.setAttribute('InputRegionId','0');
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entry_level1_2_3.setAttribute('NegativeROA','0');
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entry_level1_2_3.setAttribute('Text','');
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entry_level1_2_3.setAttribute('AreaMicrons','0.0');
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entry_level1_2_3.setAttribute('LengthMicrons',num2str(lengthArrowM));
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entry_level1_2_3.setAttribute('Area','0.0');
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entry_level1_2_3.setAttribute('Length',num2str(lengthArrow));
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entry_level1_2_3.setAttribute('ImageFocus','0');
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entry_level1_2_3.setAttribute('ImageLocation','');
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entry_level1_2_3.setAttribute('Zoom','0.022562');
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entry_level1_2_3_1 = docNode.createElement('Attributes');
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entry_level1_2_3.appendChild(entry_level1_2_3_1);
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entry_level1_2_3_2 = docNode.createElement('Vertices');
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entry_level1_2_3.appendChild(entry_level1_2_3_2);
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entry_level1_2_3_2_1 = docNode.createElement('Vertex');
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entry_level1_2_3_2.appendChild(entry_level1_2_3_2_1);
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entry_level1_2_3_2_1.setAttribute('Y',num2str(yArrow));
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entry_level1_2_3_2_1.setAttribute('X',num2str(xArrow1));
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entry_level1_2_3_2_2 = docNode.createElement('Vertex');
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entry_level1_2_3_2.appendChild(entry_level1_2_3_2_2);
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entry_level1_2_3_2_2.setAttribute('Y',num2str(yArrow));
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entry_level1_2_3_2_2.setAttribute('X',num2str(xArrow2));
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entry_level1_2_4 = docNode.createElement('plots');
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entry_level1_2.appendChild(entry_level1_2_4);
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xmlwrite(filename,docNode);
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% delete the first line from XML file
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fid = fopen(filename, 'r') ; % Open source file.
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fgetl(fid) ; % Read/discard line.
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buffer = fread(fid, Inf) ; % Read rest of the file.
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fclose(fid);
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fid = fopen(filename, 'w') ; % Open destination file.
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fwrite(fid, buffer) ; % Save to file.
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fclose(fid) ;
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winopen(fullname);
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% [status2,cmdout2]=system(fullname);
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%[status2,cmdout2]=system(fullname,'-echo');
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success = 1;
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catch ME
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error_show(ME)
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end
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end
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