Merge branch 'main' into improve_shmem_docu

Author: spenke91

.github/ISSUE_TEMPLATE/bug_report.md

@@ -20,9 +20,7 @@ A clear and concise description of what you expected to happen.
 
 **Log files**
 - If possible, add any output and error messages that you got
-- Please upload the `config.log` file (when building with autotools)
-- For failing tests, please upload the `test-suite.log` file (when building with autotools)
-- When building with CMake please upload
+- Please upload the build and test logs
   - `CMakeCache.txt`
   - `CMakeFiles/CMakeError.log`
   - `CMakeFiles/CMakeOutput.log`
@@ -34,13 +32,13 @@ A clear and concise description of what you expected to happen.
  - Compiler: [e.g., gcc, icc, mpicc]
  - Compiler version: [e.g. the output of 'gcc --version']
  - MPI version (if MPI is used): [The output of 'mpirun --version' or 'mpiexec --version']
- 
+
 **Estimated priority**
 Which of these is most applicable (remove the others):
 
-"Priority: high"  Should be solved as soon as possible 
+"Priority: high"  Should be solved as soon as possible
 
-"Priority: medium"  Should be solved within half a year 
+"Priority: medium"  Should be solved within half a year
 
 "Priority: low" Should be solved eventually
 

.github/workflows/add_release_documentation.yml

@@ -30,12 +30,13 @@ env:
 
 
 on:
-  workflow_call: 
+  workflow_call:
     inputs:
       TEST_LEVEL:
         required: true
-        type: number
-        description: 'Test level used for configuring (0 for full tests, 1 for less thorough tests, 2 for minimal tests)'
+        type: string
+        description: 'Test level used for configuring (T8_TEST_LEVEL_FULL, T8_TEST_LEVEL_MEDIUM, or T8_TEST_LEVEL_BASIC)'
+        default: 'T8_TEST_LEVEL_FULL'
 
 jobs:
   build:
@@ -46,9 +47,9 @@ jobs:
     timeout-minutes: 90
     steps:
 #
-# Setup and bootstrap
+# Setup
 #
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v5
       with:
         fetch-tags: true # required to get version tags
         fetch-depth: 0    # required to get all history, especially the version tags
@@ -65,7 +66,7 @@ jobs:
       run: git submodule update
 
 #
-#  T8CODE 
+#  T8CODE
 #     with p4est and sc as internal dependencies which is needed for make dist
 #
 #
@@ -97,7 +98,7 @@ jobs:
     timeout-minutes: 90
     steps:
     - name: Download tarball
-      uses: actions/download-artifact@v4
+      uses: actions/download-artifact@v5
       with:
           name: tarballs
           path: tarballs
@@ -106,10 +107,9 @@ jobs:
     - name: update Github_env
       run: export TAR_DIR="$RUNNER_TEMP/`basename tarballs/*.tar.gz .tar.gz`" &&
           echo TAR_DIR="$TAR_DIR" >>$GITHUB_ENV
-          
+
 # build config vars
     - name: Set test level
-      if: ${{ inputs.TEST_LEVEL != 0 }}
       run: export TEST_LEVEL_FLAG="-DT8CODE_TEST_LEVEL=${{ inputs.TEST_LEVEL }}"
            && echo TEST_LEVEL_FLAG="$TEST_LEVEL_FLAG" >> $GITHUB_ENV
     - name: build config variables
@@ -128,7 +128,7 @@ jobs:
     - name: build
       run: cd build_tar && ninja
     - name: install
-      run: cd build_tar && ninja install 
+      run: cd build_tar && ninja install
     - name: check serial
       run: cd build_tar && ctest -R _serial
     - name: check parallel

.github/workflows/build_cmake_tarball.yml

@@ -44,7 +44,7 @@ jobs:
     runs-on: ubuntu-latest
     timeout-minutes: 10
     steps:
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v5
       with:
         fetch-tags: true # required to get version tags
         fetch-depth: 0    # required to get all history, especially the version tags      

.github/workflows/check_indentation.yml

@@ -39,8 +39,9 @@ on:
         description: 'Build type (Release/Debug)'
       TEST_LEVEL:
         required: true
-        type: number
-        description: 'Test level used for configuring (0 for full tests, 1 for less thorough tests, 2 for minimal tests)'
+        type: string
+        description: 'Test level used for configuring (T8_TEST_LEVEL_FULL, T8_TEST_LEVEL_MEDIUM, or T8_TEST_LEVEL_BASIC)'
+        default: 'T8_TEST_LEVEL_FULL'
     secrets:
       CODE_COV:
         required: true
@@ -56,7 +57,7 @@ jobs:
 # Setup
 #
     - name: Download artifacts
-      uses: actions/download-artifact@v4
+      uses: actions/download-artifact@v5
       with:
         name: SC_P4EST_MPI_${{ inputs.MPI }}
     - name: untar artifact
@@ -87,11 +88,10 @@ jobs:
 #
     # Build config vars
     - name: Set test level
-      if: ${{ inputs.TEST_LEVEL != 0 }}
       run: export TEST_LEVEL_FLAG="-DT8CODE_TEST_LEVEL=${{ inputs.TEST_LEVEL }}"
            && echo TEST_LEVEL_FLAG="$TEST_LEVEL_FLAG" >> $GITHUB_ENV
     - name: build config variables
-      run: export CONFIG_OPTIONS="${TEST_LEVEL_FLAG} -DT8CODE_CODE_COVERAGE=ON -DT8CODE_USE_SYSTEM_SC=ON -DT8CODE_USE_SYSTEM_P4EST=ON -DT8CODE_BUILD_PEDANTIC=ON -DT8CODE_BUILD_WALL=ON -DT8CODE_BUILD_WERROR=ON -DT8CODE_ENABLE_MPI=$MPI -DCMAKE_BUILD_TYPE=$BUILD_TYPE -DSC_DIR=$SC_PATH/install/cmake -DP4EST_DIR=$P4EST_PATH/install/cmake"
+      run: export CONFIG_OPTIONS="${TEST_LEVEL_FLAG} -DT8CODE_CODE_COVERAGE=ON -DT8CODE_USE_SYSTEM_SC=ON -DT8CODE_USE_SYSTEM_P4EST=ON -DT8CODE_BUILD_PEDANTIC=ON -DT8CODE_BUILD_WALL=ON -DT8CODE_BUILD_WERROR=ON -DT8CODE_ENABLE_MPI=$MPI -DCMAKE_BUILD_TYPE=$BUILD_TYPE -DT8CODE_BUILD_FORTRAN_INTERFACE=ON -DSC_DIR=$SC_PATH/install/cmake -DP4EST_DIR=$P4EST_PATH/install/cmake -DT8CODE_BUILD_BENCHMARKS=OFF -DT8CODE_BUILD_DOCUMENTATION=OFF -DT8CODE_BUILD_EXAMPLES=OFF -DT8CODE_BUILD_TUTORIALS=OFF"
         && echo CONFIG_OPTIONS="$CONFIG_OPTIONS" >> $GITHUB_ENV
     # cmake
     - name: echo cmake line

.github/workflows/code_coverage.yml

@@ -111,6 +111,9 @@ jobs:
   
   evaluate_pr:
     runs-on: ubuntu-latest
+    # Don't run in parallel on the same PR. Otherwise multiple issues might be created for the same PR. 
+    concurrency:
+      group: pr-move-card-${{ github.event.pull_request.id }}
     outputs:
       NUMBER_IS_SET: ${{ steps.get_pr_issue_link.outputs.NUMBER_IS_SET }}
       CLEAN_ISSUE_NUMBER: ${{ steps.get_pr_issue_link.outputs.CLEAN_ISSUE_NUMBER }}

.github/workflows/move_card.yml

@@ -42,14 +42,12 @@ jobs:
         outputs:
             ISSUE_NUMBER: ${{ steps.create_issue_and_output_number.outputs.ISSUE_NUMBER }}
         steps:
-        - uses: actions/checkout@v4
+        - uses: actions/checkout@v5
           with:
-                repository: ${{ github.event.repository.full_name }}
-                ref: ${{ github.event.pull_request.head.ref }}
                 fetch-depth: 0
 
         - name: "Set up environment"
-          run: echo "GITHUB_TOKEN=${{ secrets.PAT }}" >> $GITHUB_ENV
+          run: echo "GH_TOKEN=${{ secrets.PAT }}" >> $GITHUB_ENV
 
         - name: "Create Issue"
           id: create_issue_and_output_number
@@ -69,12 +67,21 @@ jobs:
                 # Create the new issue. Use the DEFAULT_PROJECT to directly add it to the project. 
                 # Letting GH add the Issue to the project by automatization can lead to a delay, 
                 # and the following worfkflows will try to move a card that doesn't exist yet.
-                new_issue_url=$(gh issue create \
-                    --title "$TITLE" \
-                    --assignee "$AUTHOR" \
-                    --body "$ISSUE_BODY" \
-                    --project "${{ inputs.DEFAULT_PROJECT }}"
-                )
+                # Only assign the issue if the author is not a bot
+                if [[ "$AUTHOR" == *"[bot]"* ]]; then
+                  new_issue_url=$(gh issue create \
+                  --title "$TITLE" \
+                  --body "$ISSUE_BODY" \
+                  --project "${{ inputs.DEFAULT_PROJECT }}"
+                  )
+                else
+                  new_issue_url=$(gh issue create \
+                  --title "$TITLE" \
+                  --assignee "$AUTHOR" \
+                  --body "$ISSUE_BODY" \
+                  --project "${{ inputs.DEFAULT_PROJECT }}"
+                  )
+                fi
                 echo "new_issue_url=$new_issue_url"
                 # Extract the issue number from the URL. 
                 # The URL is in the format https://github.com/orga-name/repo-name/issues/issues_number

.github/workflows/quick_pr.yml

@@ -31,7 +31,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout Actions Repository
-        uses: actions/checkout@v4
+        uses: actions/checkout@v5
       - name: Check spelling
         uses: crate-ci/typos@master
       - name: check macros

.github/workflows/spell_check.yml

@@ -60,7 +60,7 @@ jobs:
 #
 # Setup
 #
-    - uses: actions/checkout@v4
+    - uses: actions/checkout@v5
       with: 
         fetch-depth: 0
     - name: Update packages

.github/workflows/tests_cmake_preparation.yml

@@ -52,7 +52,7 @@ jobs:
 # Setup
 #
     - name: Download artifacts
-      uses: actions/download-artifact@v4
+      uses: actions/download-artifact@v5
       with:
         name: SC_P4EST_MPI_${{ inputs.MPI }}
     - name: untar artifact