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Merge branch 'handle-neighbor-and-ghost' into handle_element-data
2 parents 7d79e3f + dc77ae3 commit efc900e

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‎.github/workflows/check_doxygen.yml‎

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name: "Check Doxygen Documentation"
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name: Check Doxygen Documentation
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# This file is part of t8code.
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# t8code is a C library to manage a collection (a forest) of multiple
@@ -32,12 +32,12 @@ on:
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workflow_dispatch:
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jobs:
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update_dev_doc:
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check_documentation:
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runs-on: ubuntu-latest
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container: dlramr/t8code-ubuntu:t8-dependencies
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timeout-minutes: 10
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steps:
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- uses: actions/checkout@v6
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- uses: actions/checkout@v6
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with:
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repository: ${{ github.event.pull_request.head.repo.full_name }}
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ref: ${{ github.event.pull_request.head.ref }}
@@ -59,17 +59,17 @@ jobs:
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texlive-font-utils \
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ghostscript
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- name: Which epstopdf
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run: which epstopdf
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run: which epstopdf
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- name: Download precompiled doxygen version 1.13.2 from official website
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run: wget https://www.doxygen.nl/files/doxygen-1.13.2.linux.bin.tar.gz
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- name: Unpack doxygen tar file
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run: |
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tar xf doxygen-1.13.2.linux.bin.tar.gz
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tar xf doxygen-1.13.2.linux.bin.tar.gz
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mv doxygen-1.13.2/bin/doxygen ./doxygen
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chmod +x ./doxygen
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echo "$PWD" >> $GITHUB_PATH
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- name: Echo doxygen executable and version
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run: |
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run: |
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which doxygen
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doxygen --version
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- name: build config variables
@@ -85,7 +85,7 @@ jobs:
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path: build/config.log
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- name: check doxygen for errors / warnings
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run: |
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cd build && cd doc
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cd build && cd doc
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doxygen Doxyfile >> doxygen.out 2> doxygen.err
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- name: Upload doxygen log
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if: failure()

‎.github/workflows/create_version_tag.yml‎

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name: Create a new version tag
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# This file is part of t8code.
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# t8code is a C library to manage a collection (a forest) of multiple
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# connected adaptive space-trees of general element types in parallel.
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#
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# Copyright (C) 2025 the developers
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#
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# t8code is free software; you can redistribute it and/or modify
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# it under the terms of the GNU General Public License as published by
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# the Free Software Foundation; either version 2 of the License, or
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# (at your option) any later version.
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#
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# t8code is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY; without even the implied warranty of
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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# GNU General Public License for more details.
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#
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# You should have received a copy of the GNU General Public License
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# along with t8code; if not, write to the Free Software Foundation, Inc.,
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# 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
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on:
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workflow_dispatch:
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schedule:
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# trigger at 0:00 on the first day of each month
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- cron: '0 0 1 * *'
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jobs:
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monthly_release:
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runs-on: ubuntu-latest
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steps:
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#checkout main branch
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- name: Checkout code
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uses: actions/checkout@v6
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with:
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fetch-depth: 0
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ref: main
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persist-credentials: false
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# Get the current version from the latest tag
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- name: Get latest tag
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id: get_latest_tag
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run: |
44+
LATEST_TAG=$(git describe --tags `git rev-list --tags --max-count=1`)
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echo "LATEST_TAG=$LATEST_TAG" >> $GITHUB_ENV
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echo "LATEST_TAG=$LATEST_TAG"
47+
# Get Major, Minor, Patch version numbers
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- name: Parse version numbers
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id: parse_version
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run: |
51+
VERSION_REGEX="v([0-9]+)\\.([0-9]+)\\.([0-9]+)"
52+
if [[ "${{ env.LATEST_TAG }}" =~ $VERSION_REGEX ]]; then
53+
MAJOR="${BASH_REMATCH[1]}"
54+
MINOR="${BASH_REMATCH[2]}"
55+
PATCH="${BASH_REMATCH[3]}"
56+
echo "MAJOR=$MAJOR" >> $GITHUB_ENV
57+
echo "MINOR=$MINOR" >> $GITHUB_ENV
58+
echo "PATCH=$PATCH" >> $GITHUB_ENV
59+
echo "MAJOR=$MAJOR, MINOR=$MINOR, PATCH=$PATCH"
60+
else
61+
echo "No valid tag found, aborting."
62+
exit 1
63+
fi
64+
# Create version name accessible in the following steps
65+
- name: Set version name
66+
run: |
67+
echo "VERSION_NAME=v${{ env.MAJOR }}.${{ env.MINOR }}.${{ env.PATCH }}-$(date +'%Y.%m.%d')" >> $GITHUB_ENV
68+
echo "VERSION_NAME=$VERSION_NAME"
69+
# Create a new version tag
70+
- name: Create version tag
71+
run: |
72+
git config user.email "t8ddy.bot@gmail.com"
73+
git config user.name "t8ddy"
74+
# configure remote to use the secret token for pushing
75+
git remote set-url origin https://x-access-token:${{ secrets.T8DDY_TOKEN }}@github.com/${{ github.repository }}
76+
git tag "${{ env.VERSION_NAME }}"
77+
git push origin --tags

.github/workflows/tests_cmake_preparation.yml renamed to .github/workflows/test_preparation.yml

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name: CMake tests preparation
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name: test preparation
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# This file is part of t8code.
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# Setup
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#
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- uses: actions/checkout@v6
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with:
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with:
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fetch-depth: 0
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- name: Update packages
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run: sudo apt-get update && sudo apt-get upgrade -y
@@ -158,7 +158,7 @@ jobs:
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if: ${{ steps.p4est_cmake_cache.outputs.cache-hit != 'true' || inputs.IGNORE_CACHE == 1 }}
159159
- name: if ignore cache, delete folders
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if: ${{ steps.p4est_cmake_cache.outputs.cache-hit != 'true' || inputs.IGNORE_CACHE == 1 }}
161-
# The true at the end is to ignore errors that i.e. occur when the folders do not exist
161+
# The true at the end is to ignore errors that i.e. occur when the folders do not exist
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run: rm -r $P4EST_BUILD || true
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- name: make folders
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if: ${{ steps.p4est_cmake_cache.outputs.cache-hit != 'true' || inputs.IGNORE_CACHE == 1 }}
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- name: p4est build release
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run: cd $P4EST_RELEASE && ninja $MAKEFLAGS && ninja $MAKEFLAGS install
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if: ${{ steps.p4est_cmake_cache.outputs.cache-hit != 'true' || inputs.IGNORE_CACHE == 1 }}
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## output cache info
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- name: output cache info
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id: used_cache
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run: echo "USED_CACHE=$USED_CACHE" >> $GITHUB_OUTPUT
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## tar artifact to keep permissions: https://github.com/actions/upload-artifact?tab=readme-ov-file#permission-loss
187187
- name: Tar files
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run: tar -cvf artifact.tar .

.github/workflows/tests_cmake_sc_p4est.yml renamed to .github/workflows/test_sc_p4est.yml

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name: CMake tests sc and p4est
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name: test sc and p4est
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# This file is part of t8code.
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#
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# SC tests
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#
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## save variables
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## save variables
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- name: Save variables
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run: export SC_DEBUG=$PWD/sc/build/Debug
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&& export SC_RELEASE=$PWD/sc/build/Release

.github/workflows/tests_cmake_t8code.yml renamed to .github/workflows/test_t8code.yml

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name: CMake tests t8code
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name: test t8code
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# This file is part of t8code.
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type: string
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description: 'Test level used for configuring (T8_TEST_LEVEL_FULL, T8_TEST_LEVEL_MEDIUM, or T8_TEST_LEVEL_BASIC)'
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default: 'T8_TEST_LEVEL_FULL'
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jobs:
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jobs:
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t8code_cmake_tests:
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timeout-minutes: 60
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runs-on: ubuntu-latest

.github/workflows/tests_cmake_t8code_api.yml renamed to .github/workflows/test_t8code_api.yml

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name: CMake tests t8code api
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name: test t8code api
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# This file is part of t8code.
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description: 'Test level used for configuring (T8_TEST_LEVEL_FULL, T8_TEST_LEVEL_MEDIUM, or T8_TEST_LEVEL_BASIC)'
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default: 'T8_TEST_LEVEL_FULL'
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48-
jobs:
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jobs:
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t8code_cmake_tests:
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timeout-minutes: 60
5151
runs-on: ubuntu-latest
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&& echo CONFIG_OPTIONS="$CONFIG_OPTIONS" >> $GITHUB_ENV
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# cmake and test with api options
9191
- name: echo cmake line
92-
run: echo cmake ../ $CONFIG_OPTIONS
92+
run: echo cmake ../ $CONFIG_OPTIONS
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- name: cmake
9494
run: mkdir build_api && cd build_api && cmake ../ $CONFIG_OPTIONS
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- name: OnFailUploadLog

.github/workflows/tests_cmake_t8code_linkage.yml renamed to .github/workflows/test_t8code_linkage.yml

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name: CMake tests t8code linkage
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name: test t8code linkage
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# This file is part of t8code.
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description: 'Test level used for configuring (T8_TEST_LEVEL_FULL, T8_TEST_LEVEL_MEDIUM, or T8_TEST_LEVEL_BASIC)'
4646
default: 'T8_TEST_LEVEL_FULL'
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48-
jobs:
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jobs:
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t8code_cmake_tests:
5050
timeout-minutes: 60
5151
runs-on: ubuntu-latest

.github/workflows/tests_cmake_t8code_w_shipped_submodules.yml renamed to .github/workflows/test_t8code_w_shipped_submodules.yml

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name: CMake tests t8code with shipped submodules
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name: test t8code with shipped submodules
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# This file is part of t8code.
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4545
description: 'Test level used for configuring (T8_TEST_LEVEL_FULL, T8_TEST_LEVEL_MEDIUM, or T8_TEST_LEVEL_BASIC)'
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default: 'T8_TEST_LEVEL_FULL'
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48-
jobs:
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jobs:
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t8code_cmake_tests:
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timeout-minutes: 60
5151
runs-on: ubuntu-latest
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5555
# Setup
5656
#
5757
- uses: actions/checkout@v6
58-
with:
58+
with:
5959
fetch-depth: 0
6060
- name: Update packages
6161
run: sudo apt-get update && sudo apt-get upgrade -y

.github/workflows/build_cmake_tarball.yml renamed to .github/workflows/test_tarball.yml

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name: CMake Tarball
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name: test tarball
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# This file is part of t8code.
44
# t8code is a C library to manage a collection (a forest) of multiple
@@ -39,7 +39,7 @@ on:
3939
default: 'T8_TEST_LEVEL_FULL'
4040

4141
jobs:
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build:
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build_tarball:
4343

4444
if: (github.event_name == 'schedule' && github.repository == 'DLR-AMR/t8code') || (github.event_name != 'schedule')
4545
runs-on: ubuntu-latest
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9191
name: tarballs
9292
path: build/tarballs
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94-
test-tarball:
95-
needs: build
94+
test_tarball:
95+
needs: build_tarball
9696
runs-on: ubuntu-latest
9797
container: dlramr/t8code-ubuntu:t8-dependencies
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timeout-minutes: 90

.github/workflows/tests_cmake_valgrind.yml renamed to .github/workflows/test_valgrind.yml

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name: Valgrind check
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name: valgrind check
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# This file is part of t8code.
44
# t8code is a C library to manage a collection (a forest) of multiple
@@ -41,7 +41,7 @@ on:
4141
description: 'Test level used for configuring (T8_TEST_LEVEL_FULL, T8_TEST_LEVEL_MEDIUM, or T8_TEST_LEVEL_BASIC)'
4242
default: 'T8_TEST_LEVEL_FULL'
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jobs:
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jobs:
4545
valgrind_check:
4646
timeout-minutes: 95
4747
runs-on: ubuntu-latest
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103103
run: cd build && ninja $MAKEFLAGS
104104
- name: ninja install
105105
run: cd build && ninja install $MAKEFLAGS
106-
# Execute script that runs a Valgrind check for all test binaries.
106+
# Execute script that runs a Valgrind check for all test binaries.
107107
# We use 3 parallel processes to run the binaries in parallel with MPI.
108108
- name: Valgrind check
109109
run: cd scripts && bash ./check_all_test_binaries_valgrind.sh --ntasks=3
110-

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