Error occurs running easyends

[wanderyum]

When I start to run the example code stickydesign.easyends('DT',5,number=10),it throws below error:

---

TypeError Traceback (most recent call last)
in ()
----> 1 stickydesign.easyends('DT',5,number=10)

/usr/local/lib/python3.5/dist-packages/stickydesign/stickydesign.py in easyends(endtype, endlength, number, interaction, fdev, maxspurious, maxendspurious, tries, oldends, adjs, energetics, alphabet, echoose, absolute, _presetavail)
461
462 if not energetics:
--> 463 efunc = EnergeticsBasic(mismatchtype='max')
464 else:
465 efunc = energetics

TypeError: init() got an unexpected keyword argument 'mismatchtype'
How to fix? Thanks!

[cgevans]

This is what happens when I merge my development code into the master branch. There are two issues here:

1. I have changed the energetics models that are used, because people started using stickydesign for toeholds, while our energy models started moving toward being very specific to DX tile sticky ends. The default is now to use EnergeticsBasic, which has none of the orientation distinctions (DT/TD) that sticky ends has, and just assumes two single-stranded regions with no information about the adjacent regions. This is denoted by 'S', so you should try stickydesign.easyends('S', 5, number=10). If you actually want DT/TD sticky ends, create an EnergeticsDAOE instance, and then pass that to easyends with the energetics= parameter.
2. I've deprecated the mismatchtype parameter, which the new models don't need, but neglected to remove that from the default energetics. I've just pushed a fix for this.

I hope this helps. I'll fix the documentation soon.