Does UMICollapse provide stats similar to that of UMI-Tools' --output-stats flag? #30
Description
Hello Daniel,
I'm benchmarking UMICollapse as an alternative to UMI-Tools, and I was wondering if your tools provided similar stats/data as the following flag that UMI-Tools offers:
https://umi-tools.readthedocs.io/en/latest/reference/dedup.html#output-stats-prefix
Upon looking through the flags listed in your README, along with the output of the umicollapse bam run, I can see there's output similar to the --log flag for UMI-Tools, but can't seem to find anything similar to --output-stats, which provides stat TSVs for edit_distance, per_umi, and per_umi_per_position.
Any information or clarification would be greatly appreciated! Thank you!
Kind regards,
Justin