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v1.3 Changes

  • PCA is calculated using a dynamic number of HVGs (specified by asymptote detection) as well as using ALL genes
  • Switched plotting over to plotnine (updated pcaplot_env.yaml)
  • Added fast clustering (update pcaplot_env.yaml)
  • Added log file output that informs how many HVGs were used for PCA calculation
  • Updates to multiqc_env.yaml to help github tests pass