We will try our best to stick to this schedule, although it is a best guess. We may (likely) deviate from this dependning on how we are doing for time as we progress. We understand that you may have other commitments and may not be able to be present 100% of the time.
Please let us know if you expect to be absent from any sessions, so that we know to move forward without you.
We have designed the schedule so that breaks are essentially built into the break out rooms, so you should feel free to take time during those sessions to stretch your legs and take a break.
- 12:00-12:30 - Welcome & introduction (Dr. Owen Wilkins)
- 12:30-1:30 - 01: The UNIX Shell
- 1:30-2:25 - Intro. to NGS (Lecture - Dr. Fred Kolling)
- 2:30-3:30 - 02: Data management & setup
- 3:30-5:00 - 03: FASTQ files & basic QC
- 12:00-12:30 - Help session
- 12:30-12:40 - Day 1 recap & questions
- 12:50-1:40 - Intro. to RNA-seq (Lecture - Dr. Owen Wilkins)
- 1:45-3:15 - 01: Read mapping
- 3:15-5:00 - 02: Alignment QC
- 12:00-12:30 - Help session
- 12:30-12:40 - Day 2 recap & questions
- 12:40-1:45 - 01: Quantification
- 1:45-3:00 - 02: Count normalization
- 3:00-3:30 - 03: Putting it all together
- 3:30-4:00 - Wrap-up & closing remarks