CDSfold_SU/COPYING at main · DasLab/CDSfold_SU · GitHub

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Program name:
  CDSfold

License:
  The source code of CDSfold contains functions obtained from the Vienna RNA package (version 2.1.1).
  You have to follow the license of the ViennaRNA package as well as that described below.

  The source code of CDSfold is provided as free software.
  It is distributed in the hope that they will be useful
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

  Permission is granted for research, educational, and commercial use
  and modification so long as
  1) the package and any derived works are not
     redistributed for any fee, other than media costs,
  2) proper credit is given to the authors of reference [1] and the
     Computational Biology Research Center, AIST, Japan,
  3) proper credit is also given to the authors of ViennaRNA package (see below)
     and the Institute for Theoretical Chemistry of the University of Vienna.

Reference:
[1] CDSfold: an algorithm for designing a protein-coding sequence with the most stable secondary structure
Goro Terai, Satoshi Kamegai and Kiyoshi Asai, Bioinformatics. 2016 32:828-34. doi: 10.1093/bioinformatics/btv678.


================== Lisense of ViennaRNA ============================
Program name:
  ViennaRNA package

License:
                Disclaimer and Copyright

  The programs, library and source code of the Vienna RNA Package are free
  software. They are distributed in the hope that they will be useful
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

  Permission is granted for research, educational, and commercial use
  and modification so long as 1) the package and any derived works are not
  redistributed for any fee, other than media costs, 2) proper credit is
  given to the authors and the Institute for Theoretical Chemistry of the
  University of Vienna.

  If you want to include this software in a commercial product, please contact
  the authors.

Authors:
  Ivo Hofacker   (all parts)
  Peter Stadler  (design, documentation, cluster algorithms)
  Walter Fontana (suboptimal folding, pre-historic implementation of mfe folding)
  Stefan Wuchty  (suboptimal folding)
  Stephan Bernhart (cofolding, local folding)
  Ulli Mueckstein (RNAup)
  Ronny Lorenz  (redesign for version 2.0, documentation, circfolding, RNA2Dfold, RNAparconv and more)