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[R a] Promotion 2025-12-02 prod (#7605, PR #7614)
2 parents 881b065 + ba475bf commit adc5df2

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‎.mypy.ini‎

Lines changed: 3 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -53,7 +53,7 @@ modules =
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azul.indexer.action_controller,
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azul.indexer.mirror_controller,
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azul.service.app_controller,
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azul.indexer.mirror_service,
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azul.indexer.mirror_file_service,
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azul.digests,
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lambdas.indexer.app,
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azul.schemas,
@@ -87,6 +87,8 @@ modules =
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azul.plugins.metadata.anvil.service.filter,
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azul.plugins.metadata.hca.service.filter,
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azul.indexer.transform,
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azul.indexer.mirror_service,
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azul.functions,
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packages =
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azul.openapi

bin/wheels/runtime/boto3-1.41.2-py3-none-any.whl renamed to bin/wheels/runtime/boto3-1.41.5-py3-none-any.whl

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bin/wheels/runtime/botocore-1.41.2-py3-none-any.whl renamed to bin/wheels/runtime/botocore-1.41.5-py3-none-any.whl

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‎bin/wheels/runtime/werkzeug-3.1.3-py3-none-any.whl‎

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‎bin/wheels/runtime/werkzeug-3.1.4-py3-none-any.whl‎

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‎docker_images.json‎

Lines changed: 33 additions & 33 deletions
Original file line numberDiff line numberDiff line change
@@ -31,18 +31,18 @@
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}
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}
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},
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"docker.io/ucscgi/azul-pycharm:2025.2.4-68": {
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"digest": "sha256:075be7e013b8a03642f6640002cb24bfa3da892d20b6c90ec6623041184969bd",
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"mirror_digest": "sha256:225de1b34347db312fe4b9f52e62e729bd912ed1fe9d6ce5e4828db4a5bbe375",
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"docker.io/ucscgi/azul-pycharm:2025.2.5-69": {
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"digest": "sha256:ee20cb9e2b6110524d4a1822f26d074674adf0e043d03b5f1a2544cc02ec53ee",
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"mirror_digest": "sha256:89e2323faad9806db4f155ea0e45794b0b4e0a1e3d5fee6a8390093f66eb6272",
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"parts": {
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"linux/amd64": {
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"digest": "sha256:835fc88ca5e04068a39192ee42d1912ce2f831b367e0a3d8f81901caee9deb22",
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"id": "sha256:fe8ea4897bc035524161b79728ff50cfc38ba5016435cc54d805bad8eb38ad0d",
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"digest": "sha256:534c5ef2e2380b2767bb41cf40b538a7eebd88ec86880f5fabb2714a887bbbf6",
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"id": "sha256:96596695c7842bf06b5492cd3c259edbd5d1941800c525d296395fc7a08694dd",
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"platform": "linux/amd64"
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},
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"linux/arm64": {
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"digest": "sha256:2474054600e6fb43eee64315d354b9ef14cd1a4d28cdccbd31cfcc114fb57243",
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"id": "sha256:c3b91da83dc3536b729ac3f22e6d2efe42f981c46db96b55184b8318b2a8ccde",
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"digest": "sha256:ce0451b8f6a44501b78802dc8b593edcd8c4334a24e52587a1c78af56c600af8",
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"id": "sha256:e49e9c9bbba24334f23125021107309fa1981f1c5c7dafaf2de2c751349278b9",
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"platform": "linux/arm64"
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}
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}
@@ -63,61 +63,61 @@
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}
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}
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},
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"docker.io/ucscgi/azul-bigquery-emulator:0.4.4-48": {
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"digest": "sha256:11bc2b80bc4a4496035d86dd146a4e7d0ebb85a36ba231175f39bed7277c9068",
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"mirror_digest": "sha256:cb287b333a09c8b070a4b96cf8d6cc9b3a2caeccbf60fc66b08c4e08f6937d59",
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"docker.io/ucscgi/azul-bigquery-emulator:0.4.4-50": {
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"digest": "sha256:dc2ed44364727d9746db56fc849cc337404a66dae81cc384ddae549dbf9f1e21",
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"mirror_digest": "sha256:798ccbcf8d7bd80e3d8840d67950d8180218e84a57a4681ea21c8de23023120c",
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"parts": {
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"linux/amd64": {
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"digest": "sha256:bddd4857a217ade0e66d811c85cfb1b5492bd47b501f1005e7ad8e335d7b4c1e",
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"id": "sha256:326fecec194e9c47d3180b06a79bd402bc019f80cf420ba76ef0851eac04b908",
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"digest": "sha256:016292ed6a0437347440749dd9f975de40d67808263c8eccdfdd3120decc6c0f",
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"id": "sha256:4ca46465567c513cd4dfd928eb3661dd9475dbdfad2ab8209cbc6850dd1ef913",
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"platform": "linux/amd64"
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},
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"linux/arm64": {
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"digest": "sha256:e8f66b2f5f63abb77afbb89f538eac0338ba673d9954703f877f5c7a01814bfa",
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"id": "sha256:88a2567e3e0284e024b8dd230b407e9467ec28e03b1adebed7ebb4b2241da83b",
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"digest": "sha256:9ab0fce4a46e25fbb7f4376f6fec5441fb3869b9e84e5810f54409a35edd523d",
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"id": "sha256:aa09e5e5bfa6dd4014a256a2892bdf4d934378e81e209126a84c70467b977001",
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"platform": "linux/arm64"
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}
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}
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},
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"docker.io/clamav/clamav:1.5.1-10": {
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"digest": "sha256:47618ad348bfd75877ed52b2c6ed88f624e1c5cd07cab7dc61211c3e53c85ee3",
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"mirror_digest": "sha256:e04a38d6ca146f67093159e9b123cfaab272921e6d6b1d9abc03777f5af2ac47",
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"docker.io/clamav/clamav:1.5.1-11": {
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"digest": "sha256:81f82a940199afab561e2532848aa9c5b023e3ba46902a99854d5ce5cd49f16c",
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"mirror_digest": "sha256:25b6175a7da295b18e94a652951eaf32c6157b28073886981b46b4d4922f570f",
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"parts": {
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"linux/amd64": {
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"digest": "sha256:f22b23c0a0667d27447011280ac78eb0ba87a24131974b8f0c35589c073a51e4",
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"id": "sha256:6aab67e876f99247ae967ea4e08093a42de07d3fcfddb9371d97690b299fadfe",
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"digest": "sha256:9c7ddcfc91169063c52ddb771c653ef48f9428d5b0cb3d29a7421617616f8db5",
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"id": "sha256:c89423cd35e105dd8ad2f58db56860eba25a281bd583c174f36f63289b7f3b32",
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"platform": "linux/amd64"
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}
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}
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},
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"docker.io/gitlab/gitlab-ce:18.6.0-ce.0": {
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"digest": "sha256:f57bc87b0ee0c750715b6c4a64394751b17cacb59fc135308ebab118fd94528e",
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"mirror_digest": "sha256:26fd4c219e194d84ae81974e537a7b5cb8a328732dd9530fff4ba652f578ee9b",
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"docker.io/gitlab/gitlab-ce:18.6.1-ce.0": {
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"digest": "sha256:4a1765618d5b3aea9f9ae5efdb4f15a1880f0cab16801116f99c611080945c56",
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"mirror_digest": "sha256:6afde47e8b21635ac02837c0ef47d8a83c8ae60bd631e363bbb3027328557655",
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"parts": {
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"linux/amd64": {
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"digest": "sha256:12a3cc004dabd413af57d1c6e947c5ceab5bc017c47f1e9f5a5ed52f5b9a8e84",
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"id": "sha256:0a28c9a23ce4064c8472327ab935443eeb2f69eb4e7983e565c9ff96032e841b",
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"digest": "sha256:41c01ae6321072f4f9308d79264f4bcfe51af32e18a566e48c7c6a6aef22a492",
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"id": "sha256:cbe010f46e26aeb7dd94b53253af30266a37ca1206863a9ad30898ce64674df1",
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"platform": "linux/amd64"
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},
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"linux/arm64": {
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"digest": "sha256:f767e2d54e116ae9784f9338b12d34af9abc0a5e4e6b4c4a3fc8df149039ef09",
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"id": "sha256:1c54e9693d8f8da7bd48f5d5a2bf892112838bb0b8cca26edb6cb9da4dd3b745",
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"digest": "sha256:877a5b3e6e89c5aac6a2ec893970531b9a5be03b3307cda9c8a82d215022d531",
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"id": "sha256:75d3b81c1ce33e51451237e5cc50e8b8074d9de1f3bf9c0f5f2edc50e13b50eb",
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"platform": "linux/arm64"
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}
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}
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},
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"docker.io/gitlab/gitlab-runner:ubuntu-v18.6.0": {
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"digest": "sha256:63b11efe19a1fa6988acf4f457d9e13633b94cd3126de3f44b1ea8a0d45de967",
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"mirror_digest": "sha256:dda0c87dc4b241e4dd2c229a7be056d50bd9a64fcd39d784e85304ce1f510a75",
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"docker.io/gitlab/gitlab-runner:ubuntu-v18.6.3": {
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"digest": "sha256:dab8fe7a2c9356f1652c96d2efedab86a3d902bdd10953834c6194f18b0382a2",
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"mirror_digest": "sha256:c3fd2edc12c1b047b3f32da58ad80972c59ae36a53e9b2d050e908ccb93463a2",
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"parts": {
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"linux/amd64": {
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"digest": "sha256:8061133a4a9073e3b3b5d4d092cb4c449c226458e035d6ad2c78f4d072da8f1f",
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"id": "sha256:3d58a3515f6a7ac6959c2ca48aaf861a8fba87808d241b932f7ef42c55855956",
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"digest": "sha256:a3e220f216e36621c481a09994231746dc81cedff72d059135237ae81f7658b5",
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"id": "sha256:6871d19130e28b89087d97c9639927abf92b44f164ae0dd3e16ec36209d89ad2",
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"platform": "linux/amd64"
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},
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"linux/arm64": {
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"digest": "sha256:efc9d180f4422b342f371299c965c97fbe44b2fd055dca2cf753897a0ef03f5c",
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"id": "sha256:a87b34ad114d0d693ae68bc72fa2a6e7759da1fcb21450ca3afd3cc305923d6f",
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"digest": "sha256:2a3ec200496c6d97f51f1f33c7661f655b68a4ad9cf301dd7ef3aa726049e06e",
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"id": "sha256:f8cead6674f8873d1497c00a301a76e979421ed6f07f3b6770781b688a6fc39a",
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"platform": "linux/arm64"
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}
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}

‎environment.py‎

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@@ -276,7 +276,7 @@ def env() -> Mapping[str, str | None]:
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'url': 'https://hub.docker.com/_/python',
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},
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'pycharm': {
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'ref': 'docker.io/ucscgi/azul-pycharm:2025.2.4-68',
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'ref': 'docker.io/ucscgi/azul-pycharm:2025.2.5-69',
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'url': 'https://hub.docker.com/repository/docker/ucscgi/azul-pycharm',
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'is_custom': True
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},
@@ -286,22 +286,22 @@ def env() -> Mapping[str, str | None]:
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'is_custom': False
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},
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'bigquery_emulator': {
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'ref': 'docker.io/ucscgi/azul-bigquery-emulator:0.4.4-48',
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'ref': 'docker.io/ucscgi/azul-bigquery-emulator:0.4.4-50',
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'url': 'https://hub.docker.com/repository/docker/ucscgi/azul-bigquery-emulator',
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'is_custom': True
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},
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# Updating any of the four images below additionally requires
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# redeploying the `gitlab` TF component.
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'clamav': {
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'ref': 'docker.io/clamav/clamav:1.5.1-10',
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'ref': 'docker.io/clamav/clamav:1.5.1-11',
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'url': 'https://hub.docker.com/r/clamav/clamav'
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},
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'gitlab': {
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'ref': 'docker.io/gitlab/gitlab-ce:18.6.0-ce.0',
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'ref': 'docker.io/gitlab/gitlab-ce:18.6.1-ce.0',
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'url': 'https://hub.docker.com/r/gitlab/gitlab-ce'
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},
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'gitlab_runner': {
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'ref': 'docker.io/gitlab/gitlab-runner:ubuntu-v18.6.0',
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'ref': 'docker.io/gitlab/gitlab-runner:ubuntu-v18.6.3',
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'url': 'https://hub.docker.com/r/gitlab/gitlab-runner'
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},
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'dind': {

‎lambdas/indexer/.chalice/config.json.template.py‎

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},
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indexer.contribute_retry.name: {
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'reserved_concurrency': config.contribution_concurrency(retry=True),
43-
'lambda_memory_size': 4096, # FIXME https://github.com/DataBiosphere/azul/issues/2902
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'lambda_memory_size': 256 if config.is_anvil_enabled() else 1024,
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'lambda_timeout': config.contribution_lambda_timeout(retry=True),
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**chalice.vpc_lambda_config(app_name)
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},
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},
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indexer.aggregate_retry.name: {
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'reserved_concurrency': config.aggregation_concurrency(retry=True),
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'lambda_memory_size': 6500,
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'lambda_memory_size': 2048 if config.is_anvil_enabled() else 3009,
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'lambda_timeout': config.aggregation_lambda_timeout(retry=True),
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**chalice.vpc_lambda_config(app_name)
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},
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**(
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{
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indexer.forward_alb_logs.name: chalice.vpc_lambda_config(app_name),
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indexer.forward_s3_logs.name: chalice.vpc_lambda_config(app_name),
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indexer.forward_alb_logs.name: {
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'lambda_memory_size': 160,
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**chalice.vpc_lambda_config(app_name),
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},
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indexer.forward_s3_logs.name: {
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'lambda_memory_size': 160,
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**chalice.vpc_lambda_config(app_name),
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}
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}
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if config.enable_log_forwarding else
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{}
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{}
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),
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indexer.update_health_cache.name: {
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'lambda_memory_size': 128,
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'lambda_memory_size': 160,
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'lambda_timeout': config.health_cache_lambda_timeout,
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**chalice.vpc_lambda_config(app_name)
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}

‎lambdas/indexer/app.py‎

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# changes and reset the minor version to zero. Otherwise, increment only
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# the minor version for backwards compatible changes. A backwards
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# compatible change is one that does not require updates to clients.
56-
'version': '3.3',
56+
'version': '3.4',
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'description': fd('''
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This is the internal API for Azul's indexer component.
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''')

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