replaced whoami string with user to get the actual logged in user

Author: PeterSu92

test/integration/e2e_logging_paths.sh

@@ -27,7 +27,7 @@ readonly LOGGING_BASE="$(dirname "${LOGGING}")"
 declare LOGGING_OVERRIDE
 
 readonly JOB_NAME="log-test"
-readonly JOB_USER="${USER:-whoami}"
+readonly JOB_USER="${USER:-$(whoami)}"
 
 # Test a basic job with base logging path
 echo "Subtest #1: Basic logging path"

test/integration/e2e_logging_paths_pattern_tasks.sh

@@ -31,7 +31,7 @@ readonly LOGGING_BASE="$(dirname "${LOGGING}")"
 declare LOGGING_OVERRIDE
 
 readonly JOB_NAME=$(logging_paths_tasks_setup::get_job_name)
-readonly JOB_USER="${USER:-whoami}"
+readonly JOB_USER="${USER:-$(whoami)}"
 
 # Set up the tasks file
 logging_paths_tasks_setup::write_tasks_file

test/integration/io_setup.sh

@@ -27,7 +27,7 @@ readonly REQUESTER_PAYS_INPUT_BAM_FULL_PATH="gs://${DSUB_BUCKET_REQUESTER_PAYS}/
 readonly REQUESTER_PAYS_POPULATION_FILE_FULL_PATH="gs://${DSUB_BUCKET_REQUESTER_PAYS}/${POPULATION_FILE}"
 
 # Set user variable like in other tests
-readonly JOB_USER="${USER:-whoami}"
+readonly JOB_USER="${USER:-$(whoami)}"
 # This is the image we use to test the PD mount feature.
 # Inject the TEST_TOKEN into the name so that multiple tests can run
 # concurrently. Since the image test can be run multiple times for one

test/integration/io_tasks_setup.sh

@@ -12,7 +12,7 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 
-readonly JOB_USER="${USER:-whoami}"
+readonly JOB_USER="${USER:-$(whoami)}"
 readonly POPULATION_FILE="gs://genomics-public-data/ftp-trace.ncbi.nih.gov/1000genomes/ftp/20131219.superpopulations.tsv"
 readonly POPULATION_MD5="68a73f849b82071afe11888bac1aa8a7"