[CORE-69]: Bump actions/checkout from 5 to 6 (#1072)

Bumps [actions/checkout](https://github.com/actions/checkout) from 5 to 6.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](actions/checkout@v5...v6)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-version: '6'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

Author: dependabot[bot]

.github/workflows/build-test-tag-and-publish.yml

@@ -17,7 +17,7 @@ jobs:
 
     steps:
       - name: Checkout sources
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Set up JDK
         uses: actions/setup-java@v5
         with:
@@ -46,7 +46,7 @@ jobs:
         ports: [ "5432:5432" ]
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         # Needed by sonar to get the git history for the branch the PR will be merged into.
         with:
           fetch-depth: 0
@@ -96,7 +96,7 @@ jobs:
     outputs:
       is-bump: ${{ steps.bumpcheck.outputs.is-bump }}
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - name: Skip version bump merges
         id: bumpcheck
         uses: ./.github/actions/bump-skip

.github/workflows/publish-app-version.yml

@@ -46,7 +46,7 @@ jobs:
           set -e
 
       - name: Clone terra-helmfile
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
         with:
           repository: broadinstitute/terra-helmfile
           token: ${{ secrets.BROADBOT_TOKEN }} # Has to be set at checkout AND later when pushing to work

.github/workflows/publish-docker.yml

@@ -19,7 +19,7 @@ jobs:
       id-token: 'write'
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - name: Set up JDK 17
         uses: actions/setup-java@v5
         with:

.github/workflows/publish-java-client.yml

@@ -8,7 +8,7 @@ jobs:
     permissions:
       id-token: write
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
         with:
           ref: main
       - name: Set up JDK 17

.github/workflows/publish-pacts.yml

@@ -26,7 +26,7 @@ jobs:
     outputs:
       is-bump: ${{ steps.bumpcheck.outputs.is-bump }}
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
       - name: Skip version bump merges
         id: bumpcheck
         uses: ./.github/actions/bump-skip
@@ -73,7 +73,7 @@ jobs:
       repo-version: ${{ steps.extract-branch.outputs.repo-version }}
 
     steps:
-      - uses: actions/checkout@v5
+      - uses: actions/checkout@v6
 
       - name: Extract branch
         id: extract-branch
@@ -108,7 +108,7 @@ jobs:
 
     steps:
       - name: Checkout current code
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Set up JDK
         uses: actions/setup-java@v5
         with:

.github/workflows/release-python-client.yml

@@ -29,7 +29,7 @@ jobs:
 
     steps:
       - name: Checkout
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
         with:
           fetch-depth: 0
 

.github/workflows/submit-dependencies.yml

@@ -13,7 +13,7 @@ jobs:
       contents: write
     steps:
       - name: Checkout sources
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
       - name: Set up JDK
         uses: actions/setup-java@v5
         with:

.github/workflows/tag.yml

@@ -45,7 +45,7 @@ jobs:
       new-tag: ${{ steps.tag.outputs.new_tag }}
     steps:
       - name: Checkout current code
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
         with:
           ref: ${{ inputs.ref }}
           token: ${{ secrets.BROADBOT_TOKEN }} # this allows the push to succeed later