From 89037c459ba6115aefad32608a54dc81b4baf888 Mon Sep 17 00:00:00 2001
From: Edmund Kump <edmund.kump@datadoghq.com>
Date: Sat, 31 May 2025 22:43:59 -0400
Subject: [PATCH 1/5] initial setup of clippy-annotation-reporter github
 action.

This is not part of the libdatadog workspace. It's a github action that
will run for CI. It reports counts of clippy allow annotations for both
changed files in the PR and a repo overall. The goal is to call
attention to excessive usage of allows, which could be a signal of
reduced code quality. This action should be moved to its own repo when
confident of its functionality.
---
 .../clippy-annotation-reporter/Cargo.lock     | 2935 +++++++++++++++++
 .../clippy-annotation-reporter/Cargo.toml     |   28 +
 .../clippy-annotation-reporter/action.yml     |   56 +
 .../clippy-annotation-reporter/rustfmt.toml   |    8 +
 .../clippy-annotation-reporter/src/main.rs    |   79 +
 .../workflows/clippy-annotation-reporter.yml  |   37 +
 6 files changed, 3143 insertions(+)
 create mode 100644 .github/actions/clippy-annotation-reporter/Cargo.lock
 create mode 100644 .github/actions/clippy-annotation-reporter/Cargo.toml
 create mode 100644 .github/actions/clippy-annotation-reporter/action.yml
 create mode 100644 .github/actions/clippy-annotation-reporter/rustfmt.toml
 create mode 100644 .github/actions/clippy-annotation-reporter/src/main.rs
 create mode 100644 .github/workflows/clippy-annotation-reporter.yml

diff --git a/.github/actions/clippy-annotation-reporter/Cargo.lock b/.github/actions/clippy-annotation-reporter/Cargo.lock
new file mode 100644
index 0000000000..b579e625a1
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diff --git a/.github/actions/clippy-annotation-reporter/Cargo.toml b/.github/actions/clippy-annotation-reporter/Cargo.toml
new file mode 100644
index 0000000000..07cfa1db37
--- /dev/null
+++ b/.github/actions/clippy-annotation-reporter/Cargo.toml
@@ -0,0 +1,28 @@
+[package]
+name = "clippy-annotation-reporter"
+rust-version = "1.78.0"
+edition = "2021"
+version = "0.1.0"
+
+[dependencies]
+clap = { version = "4.3", features = ["derive", "env"] }
+octocrab = "0.44"
+anyhow = "1.0"
+regex = "1.9"
+tokio = { version = "1", features = ["macros", "rt-multi-thread"] }
+serde_json = "1.0"
+log = "0.4"
+env_logger = "0.10"
+# Octocrab has a defined MSRV < 1.78 and depends on url 2.5.4 which also has a defined MSRV < 1.78 but url has a  dependency on `idna` has a MSRV of 1.81. Not sure what is going on here.
+url = "=2.5.2"
+toml = "0.8.22"
+mockall = "0.13.1"
+
+[dev-dependencies]
+httpmock = "0.6"
+http = "1.1.0"
+tempfile = "3.20.0"
+
+# TODO: Remove this when move to separate repo
+[workspace]
+members = ["."]
diff --git a/.github/actions/clippy-annotation-reporter/action.yml b/.github/actions/clippy-annotation-reporter/action.yml
new file mode 100644
index 0000000000..467255524f
--- /dev/null
+++ b/.github/actions/clippy-annotation-reporter/action.yml
@@ -0,0 +1,56 @@
+name: 'Clippy Annotation Reporter'
+description: 'Reports changes in Clippy allow annotations'
+author: 'Datadog'
+
+inputs:
+  github-token:
+    description: 'GitHub token for PR comment access'
+    required: true
+    default: ${{ github.token }}
+  allow-annotation-rules:
+    description: 'Comma-separated list of clippy rules to track'
+    required: false
+    default: 'unwrap_used,expect_used,todo,unimplemented,panic,unreachable'
+  base-branch:
+    description: 'Base branch to compare against'
+    required: false
+    default: 'origin/main'
+  log_level:
+    description: 'Log level (error, warn, info, debug, trace)'
+    required: false
+    default: 'info'
+
+runs:
+  using: 'composite'
+  steps:
+    - name: Set up Rust
+      shell: bash
+      run: rustup install stable && rustup default stable
+
+    - name: Fetch all branches
+      shell: bash
+      run: |
+        git fetch --all
+        echo "Available branches:"
+        git branch -a
+
+    - name: Build annotation reporter
+      shell: bash
+      run: |
+        cd ${{ github.action_path }}
+        cargo build --release
+    - name: Debug step
+      shell: bash
+      run: |
+        FILE_PATH="data-pipeline/src/trace_exporter/mod.rs"
+    - name: Run annotation reporter
+      shell: bash
+      run: |
+        ${{ github.action_path }}/target/release/clippy-annotation-reporter \
+          --token "${{ inputs.github-token }}" \
+          --rules "${{ inputs.allow-annotation-rules }}" \
+          --repo "${{ github.repository }}" \
+          --pr "${{ github.event.number }}" \
+          --base-branch "${{ inputs.base_branch }}"
+      env:
+        GITHUB_TOKEN: ${{ inputs.github-token }}
diff --git a/.github/actions/clippy-annotation-reporter/rustfmt.toml b/.github/actions/clippy-annotation-reporter/rustfmt.toml
new file mode 100644
index 0000000000..47d8649ac1
--- /dev/null
+++ b/.github/actions/clippy-annotation-reporter/rustfmt.toml
@@ -0,0 +1,8 @@
+unstable_features = true
+
+format_macro_matchers = true
+format_code_in_doc_comments=true
+wrap_comments = true
+max_width=100
+comment_width=100
+doc_comment_code_block_width=100
diff --git a/.github/actions/clippy-annotation-reporter/src/main.rs b/.github/actions/clippy-annotation-reporter/src/main.rs
new file mode 100644
index 0000000000..9190aaceb8
--- /dev/null
+++ b/.github/actions/clippy-annotation-reporter/src/main.rs
@@ -0,0 +1,79 @@
+// Copyright 2024-Present Datadog, Inc. https://www.datadoghq.com/
+// SPDX-License-Identifier: Apache-2.0
+
+use anyhow::{Context as _, Result};
+use log::info;
+use octocrab::Octocrab;
+use std::env;
+
+mod analyzer;
+mod commenter;
+mod config;
+mod report_generator;
+
+use crate::config::ConfigBuilder;
+use crate::report_generator::generate_report;
+
+#[tokio::main]
+async fn main() -> Result<()> {
+    let log_level = env::var("INPUT_LOG_LEVEL").unwrap_or_else(|_| "info".to_string());
+
+    // Set RUST_LOG if not already set
+    if env::var("RUST_LOG").is_err() {
+        env::set_var("RUST_LOG", &log_level);
+    }
+
+    env_logger::init();
+
+    info!("Clippy Annotation Reporter starting...");
+
+    let config = ConfigBuilder::new().build()?;
+
+    let octocrab = Octocrab::builder()
+        .personal_token(config.token.clone())
+        .build()
+        .context("Failed to build GitHub API client")?;
+
+    let analysis_result = match analyzer::run_analysis(
+        &octocrab,
+        &config.owner,
+        &config.repo,
+        config.pr_number,
+        &config.base_branch,
+        &config.head_branch,
+        &config.rules,
+    )
+    .await
+    {
+        Ok(result) => result,
+        Err(e) => {
+            if e.to_string().contains("No Rust files changed") {
+                info!("No Rust files changed in this PR, nothing to analyze.");
+                return Ok(());
+            }
+            return Err(e);
+        }
+    };
+
+    let report = generate_report(
+        &analysis_result,
+        &config.rules,
+        &config.repository,
+        &config.base_branch,
+        &config.head_branch,
+    );
+
+    commenter::post_comment(
+        &octocrab,
+        &config.owner,
+        &config.repo,
+        config.pr_number,
+        report,
+        None,
+    )
+    .await?;
+
+    info!("Process completed successfully!");
+
+    Ok(())
+}
diff --git a/.github/workflows/clippy-annotation-reporter.yml b/.github/workflows/clippy-annotation-reporter.yml
new file mode 100644
index 0000000000..47748de6cc
--- /dev/null
+++ b/.github/workflows/clippy-annotation-reporter.yml
@@ -0,0 +1,37 @@
+name: Clippy Annotation Reporter
+
+on:
+  pull_request:
+
+permissions:
+  contents: read
+  pull-requests: write
+
+jobs:
+  clippy-annotation-reporter:
+    runs-on: ubuntu-latest
+    continue-on-error: true
+    env:
+      CARGO_TERM_COLOR: always
+    steps:
+      - name: Free Disk Space
+        uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1
+        with:
+          tool-cache: false
+          android: true
+          dotnet: true
+          haskell: true
+          large-packages: false
+          docker-images: true
+          swap-storage: true
+      - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # 4.2.2
+        with:
+          fetch-depth: 0  # Full history
+      - name: Install Rust
+        run: rustup install stable
+      - name: Run annotation reporter
+        uses: ./.github/actions/clippy-annotation-reporter
+        with:
+          github-token: "${{ secrets.GITHUB_TOKEN }}"
+          allow-annotation-rules: "expect_used, panic, todo, unimplemented, unwrap_used"
+          log_level: 'info'

From 1ef0359ba1a4ce7598f5d0d96239297de2580903 Mon Sep 17 00:00:00 2001
From: Edmund Kump <edmund.kump@datadoghq.com>
Date: Sat, 31 May 2025 22:44:25 -0400
Subject: [PATCH 2/5] add the analyzer module to clippy-annotation-reporter.
 This module reviews the files in the repo to parse and count the allow
 annotations usage. It also compares changed files to their base to determine
 the diffs of counts.

---
 .../src/analyzer/annotation.rs                | 326 ++++++++++
 .../src/analyzer/crate_detection.rs           | 333 ++++++++++
 .../src/analyzer/git.rs                       | 586 ++++++++++++++++++
 .../src/analyzer/mod.rs                       | 203 ++++++
 4 files changed, 1448 insertions(+)
 create mode 100644 .github/actions/clippy-annotation-reporter/src/analyzer/annotation.rs
 create mode 100644 .github/actions/clippy-annotation-reporter/src/analyzer/crate_detection.rs
 create mode 100644 .github/actions/clippy-annotation-reporter/src/analyzer/git.rs
 create mode 100644 .github/actions/clippy-annotation-reporter/src/analyzer/mod.rs

diff --git a/.github/actions/clippy-annotation-reporter/src/analyzer/annotation.rs b/.github/actions/clippy-annotation-reporter/src/analyzer/annotation.rs
new file mode 100644
index 0000000000..f4e0ab485c
--- /dev/null
+++ b/.github/actions/clippy-annotation-reporter/src/analyzer/annotation.rs
@@ -0,0 +1,326 @@
+// Copyright 2024-Present Datadog, Inc. https://www.datadoghq.com/
+// SPDX-License-Identifier: Apache-2.0
+
+//! Functions for finding and parsing clippy annotations
+
+use crate::analyzer::crate_detection::get_crate_for_file;
+use crate::analyzer::ClippyAnnotation;
+use anyhow::{Context, Result};
+use regex::Regex;
+use std::collections::HashMap;
+use std::rc::Rc;
+
+/// Find clippy annotations in file content
+pub(super) fn find_annotations(
+    annotations: &mut Vec<ClippyAnnotation>,
+    file: &str,
+    content: &str,
+    regex: &Regex,
+    rule_cache: &mut HashMap<String, Rc<String>>,
+) {
+    // Use Rc for file path
+    let file_rc = Rc::new(file.to_owned());
+
+    for line in content.lines() {
+        if let Some(captures) = regex.captures(line) {
+            if let Some(rule_match) = captures.get(1) {
+                let rule_str = rule_match.as_str().to_owned();
+
+                // Get or create Rc for this rule
+                let rule_rc = match rule_cache.get(&rule_str) {
+                    Some(cached) => Rc::clone(cached),
+                    None => {
+                        let rc = Rc::new(rule_str.clone());
+                        rule_cache.insert(rule_str, Rc::clone(&rc));
+                        rc
+                    }
+                };
+
+                annotations.push(ClippyAnnotation {
+                    file: Rc::clone(&file_rc),
+                    rule: rule_rc,
+                });
+            }
+        }
+    }
+}
+
+/// Count annotations by rule
+pub(super) fn count_annotations_by_rule(
+    annotations: &[ClippyAnnotation],
+) -> HashMap<Rc<String>, usize> {
+    let mut counts = HashMap::with_capacity(annotations.len().min(20));
+
+    for annotation in annotations {
+        *counts.entry(Rc::clone(&annotation.rule)).or_insert(0) += 1;
+    }
+
+    counts
+}
+
+/// Count annotations by crate
+pub(super) fn count_annotations_by_crate(
+    annotations: &[ClippyAnnotation],
+) -> HashMap<Rc<String>, usize> {
+    let mut counts = HashMap::new();
+    let mut crate_cache: HashMap<String, Rc<String>> = HashMap::new();
+
+    for annotation in annotations {
+        let file_path = annotation.file.as_str();
+
+        // Use cached crate name if we've seen this file before
+        let crate_name = match crate_cache.get(file_path) {
+            Some(name) => name.clone(),
+            None => {
+                let name = Rc::new(get_crate_for_file(file_path).to_owned());
+                crate_cache.insert(file_path.to_owned(), Rc::clone(&name));
+
+                name
+            }
+        };
+
+        *counts.entry(crate_name).or_insert(0) += 1;
+    }
+
+    counts
+}
+
+/// Create a regex for matching clippy allow annotations
+pub(super) fn create_annotation_regex(rules: &[String]) -> Result<Regex> {
+    if rules.is_empty() {
+        return Err(anyhow::anyhow!("Cannot create regex with empty rules list"));
+    }
+
+    let rule_pattern = rules.join("|");
+    let regex = Regex::new(&format!(
+        r"#\s*\[\s*allow\s*\(\s*clippy\s*::\s*({})\s*\)\s*\]",
+        rule_pattern
+    ))
+    .context("Failed to compile annotation regex")?;
+
+    Ok(regex)
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+    use std::rc::Rc;
+
+    #[test]
+    fn test_count_annotations_by_rule() {
+        // Create test annotations
+        let rule1 = Rc::new("clippy::unwrap_used".to_owned());
+        let rule2 = Rc::new("clippy::match_bool".to_owned());
+        let file = Rc::new("src/main.rs".to_owned());
+
+        let annotations = vec![
+            ClippyAnnotation {
+                file: file.clone(),
+                rule: rule1.clone(),
+            },
+            ClippyAnnotation {
+                file: file.clone(),
+                rule: rule1.clone(),
+            },
+            ClippyAnnotation {
+                file: file.clone(),
+                rule: rule2.clone(),
+            },
+            ClippyAnnotation {
+                file: file.clone(),
+                rule: rule1.clone(),
+            },
+        ];
+
+        let counts = count_annotations_by_rule(&annotations);
+
+        assert_eq!(counts.len(), 2, "Should have counts for 2 rules");
+        assert_eq!(counts[&rule1], 3, "Rule1 should have 3 annotations");
+        assert_eq!(counts[&rule2], 1, "Rule2 should have 1 annotation");
+    }
+
+    #[test]
+    fn test_count_annotations_by_rule_empty() {
+        // Test with empty annotations
+        let annotations: Vec<ClippyAnnotation> = vec![];
+        let counts = count_annotations_by_rule(&annotations);
+
+        assert_eq!(
+            counts.len(),
+            0,
+            "Empty annotations should produce empty counts"
+        );
+    }
+
+    #[test]
+    fn test_count_annotations_by_crate() {
+        use std::fs::{self, File};
+        use std::io::Write;
+        use tempfile::TempDir;
+
+        // Create a temporary directory structure for testing
+        let temp_dir = TempDir::new().expect("Failed to create temp directory");
+        let temp_path = temp_dir.path();
+
+        // Create a directory structure with two different crates
+        // crate1
+        // ├── Cargo.toml (package.name = "crate1")
+        // └── src
+        //     ├── lib.rs
+        //     └── module.rs
+        // crate2
+        // ├── Cargo.toml (package.name = "crate2")
+        // └── src
+        //     └── main.rs
+
+        // Create directories
+        let crate1_dir = temp_path.join("crate1");
+        let crate1_src_dir = crate1_dir.join("src");
+        let crate2_dir = temp_path.join("crate2");
+        let crate2_src_dir = crate2_dir.join("src");
+
+        fs::create_dir_all(&crate1_src_dir).expect("Failed to create crate1/src directory");
+        fs::create_dir_all(&crate2_src_dir).expect("Failed to create crate2/src directory");
+
+        // Create Cargo.toml files with specific package names
+        let crate1_cargo = crate1_dir.join("Cargo.toml");
+        let mut cargo1_file =
+            File::create(&crate1_cargo).expect("Failed to create crate1 Cargo.toml");
+        writeln!(
+            cargo1_file,
+            r#"[package]
+name = "crate1"
+version = "0.1.0"
+edition = "2021"
+"#
+        )
+        .expect("Failed to write to crate1 Cargo.toml");
+
+        let crate2_cargo = crate2_dir.join("Cargo.toml");
+        let mut cargo2_file =
+            File::create(&crate2_cargo).expect("Failed to create crate2 Cargo.toml");
+        writeln!(
+            cargo2_file,
+            r#"[package]
+name = "crate2"
+version = "0.1.0"
+edition = "2021"
+"#
+        )
+        .expect("Failed to write to crate2 Cargo.toml");
+
+        // Create source files
+        let crate1_lib = crate1_src_dir.join("lib.rs");
+        let mut lib_file = File::create(&crate1_lib).expect("Failed to create lib.rs");
+        writeln!(lib_file, "// Empty lib file").expect("Failed to write to lib.rs");
+
+        let crate1_module = crate1_src_dir.join("module.rs");
+        let mut module_file = File::create(&crate1_module).expect("Failed to create module.rs");
+        writeln!(module_file, "// Empty module file").expect("Failed to write to module.rs");
+
+        let crate2_main = crate2_src_dir.join("main.rs");
+        let mut main_file = File::create(&crate2_main).expect("Failed to create main.rs");
+        writeln!(main_file, "// Empty main file").expect("Failed to write to main.rs");
+
+        // Create test annotations with the real file paths
+        let rule = Rc::new("clippy::unwrap_used".to_owned());
+
+        let crate1_lib_path = Rc::new(crate1_lib.to_string_lossy().to_string());
+        let crate1_module_path = Rc::new(crate1_module.to_string_lossy().to_string());
+        let crate2_main_path = Rc::new(crate2_main.to_string_lossy().to_string());
+
+        let annotations = vec![
+            ClippyAnnotation {
+                file: crate1_lib_path.clone(),
+                rule: rule.clone(),
+            },
+            ClippyAnnotation {
+                file: crate1_module_path.clone(),
+                rule: rule.clone(),
+            },
+            ClippyAnnotation {
+                file: crate1_module_path.clone(), // Another annotation in the same file
+                rule: rule.clone(),
+            },
+            ClippyAnnotation {
+                file: crate2_main_path.clone(),
+                rule: rule.clone(),
+            },
+        ];
+
+        let counts = count_annotations_by_crate(&annotations);
+
+        assert_eq!(counts.len(), 2, "Should have counts for 2 crates");
+
+        let crate1_count = counts
+            .iter()
+            .find(|(k, _)| k.contains("crate1"))
+            .map(|(_, v)| *v)
+            .unwrap_or(0);
+
+        let crate2_count = counts
+            .iter()
+            .find(|(k, _)| k.contains("crate2"))
+            .map(|(_, v)| *v)
+            .unwrap_or(0);
+
+        assert_eq!(crate1_count, 3, "crate1 should have 3 annotations");
+        assert_eq!(crate2_count, 1, "crate2 should have 1 annotation");
+    }
+
+    #[test]
+    fn test_count_annotations_by_crate_empty() {
+        // Test with empty annotations
+        let annotations: Vec<ClippyAnnotation> = vec![];
+        let counts = count_annotations_by_crate(&annotations);
+
+        assert_eq!(
+            counts.len(),
+            0,
+            "Empty annotations should produce empty counts"
+        );
+    }
+
+    #[test]
+    fn test_create_annotation_regex_single_rule() {
+        let rules = vec!["unwrap_used".to_owned()]; // Rule without clippy:: prefix
+        let regex = create_annotation_regex(&rules).expect("Failed to create regex");
+
+        // Test matching
+        assert!(regex.is_match("#[allow(clippy::unwrap_used)]"));
+        assert!(regex.is_match("#[allow(clippy:: unwrap_used )]")); // With spaces
+        assert!(regex.is_match("#  [ allow ( clippy :: unwrap_used ) ]")); // With more spaces
+
+        // Test non-matching
+        assert!(!regex.is_match("#[allow(clippy::unused_imports)]"));
+        assert!(!regex.is_match("#[allow(unwrap_used)]")); // Missing clippy::
+        assert!(!regex.is_match("clippy::unwrap_used")); // Missing #[allow()]
+    }
+    #[test]
+    fn test_create_annotation_regex_multiple_rules() {
+        let rules = vec!["unwrap_used".to_owned(), "match_bool".to_owned()];
+        let regex = create_annotation_regex(&rules).expect("Failed to create regex");
+
+        assert!(regex.is_match("#[allow(clippy::unwrap_used)]"));
+        assert!(regex.is_match("#[allow(clippy::match_bool)]"));
+
+        // Test mixed spacing and formatting
+        assert!(regex.is_match("#[allow(clippy:: unwrap_used )]")); // With spaces
+        assert!(regex.is_match("#  [ allow ( clippy :: match_bool ) ]")); // With more spaces
+
+        // Test non-matching
+        assert!(!regex.is_match("#[allow(clippy::unused_imports)]"));
+        assert!(!regex.is_match("#[allow(unwrap_used)]")); // Missing clippy::
+    }
+
+    #[test]
+    fn test_create_annotation_regex_empty_rules() {
+        let rules: Vec<String> = vec![];
+        let result = create_annotation_regex(&rules);
+
+        assert!(
+            result.is_err(),
+            "Creating regex with empty rules should fail"
+        );
+    }
+}
diff --git a/.github/actions/clippy-annotation-reporter/src/analyzer/crate_detection.rs b/.github/actions/clippy-annotation-reporter/src/analyzer/crate_detection.rs
new file mode 100644
index 0000000000..3e5847bbdf
--- /dev/null
+++ b/.github/actions/clippy-annotation-reporter/src/analyzer/crate_detection.rs
@@ -0,0 +1,333 @@
+// Copyright 2024-Present Datadog, Inc. https://www.datadoghq.com/
+// SPDX-License-Identifier: Apache-2.0
+
+use log::error;
+use std::fs;
+use std::path::{Path, PathBuf};
+use toml::Value;
+
+/// Get crate information for a given file path by finding the closest Cargo.toml
+pub(super) fn get_crate_for_file(file_path: &str) -> String {
+    let path = Path::new(file_path);
+
+    // Try to find the closest Cargo.toml file
+    if let Some(cargo_toml_path) = find_closest_cargo_toml(path) {
+        if let Some(crate_name) = extract_package_name(&cargo_toml_path) {
+            return crate_name;
+        }
+    }
+
+    error!(
+        "Could not find crate for {}, falling back to unknown-crate",
+        file_path
+    );
+    "unknown-crate".to_owned()
+}
+
+/// Find the closest Cargo.toml file by traversing up the directory tree
+fn find_closest_cargo_toml(mut path: &Path) -> Option<PathBuf> {
+    // Start with the directory containing the file
+    if !path.is_dir() {
+        path = path.parent()?;
+    }
+
+    // Traverse up the directory tree
+    loop {
+        let cargo_path = path.join("Cargo.toml");
+        if cargo_path.exists() {
+            return Some(cargo_path);
+        }
+
+        // Check if we've reached the root
+        let parent = path.parent()?;
+        if parent == path {
+            // We've reached the root without finding Cargo.toml
+            return None;
+        }
+
+        // Move up one directory
+        path = parent;
+    }
+}
+
+/// Extract package name from Cargo.toml
+fn extract_package_name(cargo_toml_path: &Path) -> Option<String> {
+    // Read the Cargo.toml file
+    let content = match fs::read_to_string(cargo_toml_path) {
+        Ok(content) => content,
+        Err(e) => {
+            log::warn!("Failed to read {}: {}", cargo_toml_path.display(), e);
+            return None;
+        }
+    };
+
+    // Parse the TOML
+    let toml_value: Value = match content.parse() {
+        Ok(value) => value,
+        Err(e) => {
+            log::warn!("Failed to parse {}: {}", cargo_toml_path.display(), e);
+            return None;
+        }
+    };
+
+    // Extract the package name
+    toml_value
+        .get("package")?
+        .get("name")?
+        .as_str()
+        .map(|s| s.to_string())
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+    use std::fs::{self, File};
+    use std::io::Write;
+    use tempfile::TempDir;
+
+    // Helper function to create a Cargo.toml file with a specific package name
+    fn create_cargo_toml(path: &Path, package_name: &str) -> std::io::Result<()> {
+        let mut file = File::create(path)?;
+        writeln!(
+            file,
+            r#"[package]
+name = "{}"
+version = "0.1.0"
+edition = "2021"
+"#,
+            package_name
+        )?;
+        Ok(())
+    }
+
+    #[test]
+    fn test_get_crate_for_file_direct_parent() {
+        // Create a temporary directory with a specific crate structure
+        let temp_dir = TempDir::new().expect("Failed to create temp directory");
+        let crate_root = temp_dir.path().join("my-crate");
+        fs::create_dir_all(&crate_root).expect("Failed to create crate directory");
+
+        // Create Cargo.toml in the crate root
+        let cargo_toml_path = crate_root.join("Cargo.toml");
+        create_cargo_toml(&cargo_toml_path, "my-awesome-crate")
+            .expect("Failed to create Cargo.toml");
+
+        // Create a source file in the same directory
+        let source_file_path = crate_root.join("lib.rs");
+        File::create(&source_file_path).expect("Failed to create source file");
+
+        let crate_name = get_crate_for_file(&source_file_path.to_string_lossy());
+
+        assert_eq!(
+            crate_name, "my-awesome-crate",
+            "Should identify the correct crate name from direct parent"
+        );
+    }
+
+    #[test]
+    fn test_get_crate_for_file_nested_directory() {
+        // Create a temporary directory with a nested structure
+        let temp_dir = TempDir::new().expect("Failed to create temp directory");
+        let crate_root = temp_dir.path().join("my-crate");
+        let src_dir = crate_root.join("src");
+        let module_dir = src_dir.join("module");
+        fs::create_dir_all(&module_dir).expect("Failed to create nested directories");
+
+        // Create Cargo.toml in the crate root
+        let cargo_toml_path = crate_root.join("Cargo.toml");
+        create_cargo_toml(&cargo_toml_path, "nested-crate").expect("Failed to create Cargo.toml");
+
+        // Create a source file in the nested directory
+        let source_file_path = module_dir.join("mod.rs");
+        File::create(&source_file_path).expect("Failed to create source file");
+
+        let crate_name = get_crate_for_file(&source_file_path.to_string_lossy());
+
+        assert_eq!(
+            crate_name, "nested-crate",
+            "Should identify the correct crate name from nested directory"
+        );
+    }
+
+    #[test]
+    fn test_get_crate_for_file_multiple_cargo_tomls() {
+        // Create a temporary directory with nested crates
+        let temp_dir = TempDir::new().expect("Failed to create temp directory");
+        let workspace_dir = temp_dir.path().join("workspace");
+        let parent_crate_dir = workspace_dir.join("parent-crate");
+        let child_crate_dir = parent_crate_dir.join("child-crate");
+        let child_src_dir = child_crate_dir.join("src");
+
+        fs::create_dir_all(&parent_crate_dir).expect("Failed to create parent crate directory");
+        fs::create_dir_all(&child_src_dir).expect("Failed to create child crate src directory");
+
+        // Create Cargo.toml in both crate directories
+        let parent_cargo_toml = parent_crate_dir.join("Cargo.toml");
+        create_cargo_toml(&parent_cargo_toml, "parent-crate")
+            .expect("Failed to create parent Cargo.toml");
+
+        let child_cargo_toml = child_crate_dir.join("Cargo.toml");
+        create_cargo_toml(&child_cargo_toml, "child-crate")
+            .expect("Failed to create child Cargo.toml");
+
+        // Create a source file in the child crate
+        let source_file_path = child_src_dir.join("lib.rs");
+        File::create(&source_file_path).expect("Failed to create source file");
+
+        let crate_name = get_crate_for_file(&source_file_path.to_string_lossy());
+
+        assert_eq!(
+            crate_name, "child-crate",
+            "Should identify the closest crate"
+        );
+    }
+
+    #[test]
+    fn test_get_crate_for_file_no_cargo_toml() {
+        // Create a temporary directory with no Cargo.toml
+        let temp_dir = TempDir::new().expect("Failed to create temp directory");
+        let src_dir = temp_dir.path().join("src");
+        fs::create_dir_all(&src_dir).expect("Failed to create src directory");
+
+        // Create a source file
+        let source_file_path = src_dir.join("orphan.rs");
+        File::create(&source_file_path).expect("Failed to create source file");
+
+        let crate_name = get_crate_for_file(&source_file_path.to_string_lossy());
+
+        assert_eq!(
+            crate_name, "unknown-crate",
+            "Should return unknown-crate when no Cargo.toml is found"
+        );
+    }
+
+    #[test]
+    fn test_get_crate_for_file_invalid_cargo_toml() {
+        // Create a temporary directory with an invalid Cargo.toml
+        let temp_dir = TempDir::new().expect("Failed to create temp directory");
+        let crate_dir = temp_dir.path().join("invalid-crate");
+        fs::create_dir_all(&crate_dir).expect("Failed to create crate directory");
+
+        // Create an invalid Cargo.toml (missing package name)
+        let cargo_toml_path = crate_dir.join("Cargo.toml");
+        let mut file = File::create(&cargo_toml_path).expect("Failed to create Cargo.toml");
+        writeln!(
+            file,
+            r#"
+[package]
+version = "0.1.0"
+edition = "2021"
+"#
+        )
+        .expect("Failed to write to Cargo.toml");
+
+        // Create a source file
+        let source_file_path = crate_dir.join("lib.rs");
+        File::create(&source_file_path).expect("Failed to create source file");
+
+        let crate_name = get_crate_for_file(&source_file_path.to_string_lossy());
+
+        assert_eq!(
+            crate_name, "unknown-crate",
+            "Should return unknown-crate when Cargo.toml is invalid"
+        );
+    }
+
+    #[test]
+    fn test_get_crate_for_file_workspace_member() {
+        // Create a temporary directory with a workspace structure
+        let temp_dir = TempDir::new().expect("Failed to create temp directory");
+        let workspace_dir = temp_dir.path().join("workspace");
+        fs::create_dir_all(&workspace_dir).expect("Failed to create workspace directory");
+
+        // Create workspace Cargo.toml
+        let workspace_cargo_toml = workspace_dir.join("Cargo.toml");
+        let mut file =
+            File::create(&workspace_cargo_toml).expect("Failed to create workspace Cargo.toml");
+        writeln!(
+            file,
+            r#"
+[workspace]
+members = ["member1", "member2"]
+"#
+        )
+        .expect("Failed to write to workspace Cargo.toml");
+
+        // Create member1 crate
+        let member1_dir = workspace_dir.join("member1");
+        let member1_src_dir = member1_dir.join("src");
+        fs::create_dir_all(&member1_src_dir).expect("Failed to create member1 src directory");
+
+        // Create member1 Cargo.toml
+        let member1_cargo_toml = member1_dir.join("Cargo.toml");
+        create_cargo_toml(&member1_cargo_toml, "workspace-member1")
+            .expect("Failed to create member1 Cargo.toml");
+
+        // Create a source file in member1
+        let source_file_path = member1_src_dir.join("lib.rs");
+        File::create(&source_file_path).expect("Failed to create source file");
+
+        let crate_name = get_crate_for_file(&source_file_path.to_string_lossy());
+
+        assert_eq!(
+            crate_name, "workspace-member1",
+            "Should identify the workspace member crate"
+        );
+    }
+
+    #[test]
+    fn test_get_crate_for_file_non_existent_file() {
+        // Test with a non-existent file path
+        let crate_name = get_crate_for_file("/path/to/non/existent/file.rs");
+
+        assert_eq!(
+            crate_name, "unknown-crate",
+            "Should return unknown-crate for non-existent file"
+        );
+    }
+
+    #[test]
+    fn test_get_crate_for_file_with_special_chars() {
+        // Create a temporary directory with spaces and special characters
+        let temp_dir = TempDir::new().expect("Failed to create temp directory");
+        let crate_dir = temp_dir.path().join("my crate with spaces");
+        fs::create_dir_all(&crate_dir).expect("Failed to create crate directory with spaces");
+
+        // Create Cargo.toml
+        let cargo_toml_path = crate_dir.join("Cargo.toml");
+        create_cargo_toml(&cargo_toml_path, "special-chars-crate")
+            .expect("Failed to create Cargo.toml");
+
+        // Create a source file
+        let source_file_path = crate_dir.join("special file.rs");
+        File::create(&source_file_path).expect("Failed to create source file with spaces");
+
+        let crate_name = get_crate_for_file(&source_file_path.to_string_lossy());
+
+        assert_eq!(
+            crate_name, "special-chars-crate",
+            "Should handle paths with spaces correctly"
+        );
+    }
+
+    #[test]
+    fn test_get_crate_for_file_with_directory_not_file() {
+        // Create a temporary directory structure
+        let temp_dir = TempDir::new().expect("Failed to create temp directory");
+        let crate_dir = temp_dir.path().join("directory-test");
+        let src_dir = crate_dir.join("src");
+        fs::create_dir_all(&src_dir).expect("Failed to create directories");
+
+        // Create Cargo.toml
+        let cargo_toml_path = crate_dir.join("Cargo.toml");
+        create_cargo_toml(&cargo_toml_path, "directory-crate")
+            .expect("Failed to create Cargo.toml");
+
+        let crate_name = get_crate_for_file(&src_dir.to_string_lossy());
+
+        assert_eq!(
+            crate_name, "directory-crate",
+            "Should work with directory paths"
+        );
+    }
+}
diff --git a/.github/actions/clippy-annotation-reporter/src/analyzer/git.rs b/.github/actions/clippy-annotation-reporter/src/analyzer/git.rs
new file mode 100644
index 0000000000..ef5aee6b39
--- /dev/null
+++ b/.github/actions/clippy-annotation-reporter/src/analyzer/git.rs
@@ -0,0 +1,586 @@
+// Copyright 2024-Present Datadog, Inc. https://www.datadoghq.com/
+// SPDX-License-Identifier: Apache-2.0
+
+use anyhow::{Context as _, Result};
+use log::{debug, info};
+use octocrab::Octocrab;
+use std::process::{Command, Output};
+
+// Define a trait for command execution
+#[cfg_attr(test, mockall::automock)]
+pub trait CommandExecutor {
+    fn execute_command<'a>(&self, command: &str, args: &'a [&'a str]) -> std::io::Result<Output>;
+}
+
+pub struct RealCommandExecutor;
+
+impl CommandExecutor for RealCommandExecutor {
+    fn execute_command<'a>(&self, command: &str, args: &'a [&'a str]) -> std::io::Result<Output> {
+        Command::new(command).args(args).output()
+    }
+}
+
+// Default implementation for RealCommandExecutor
+impl Default for RealCommandExecutor {
+    fn default() -> Self {
+        Self
+    }
+}
+
+// Git operations struct that takes a CommandExecutor
+pub struct GitOperations<T: CommandExecutor> {
+    executor: T,
+}
+
+impl<T: CommandExecutor> GitOperations<T> {
+    // Constructor with explicit executor
+    pub fn new(executor: T) -> Self {
+        Self { executor }
+    }
+
+    /// Get file content from a specific branch
+    pub fn get_file_content(&self, file: &str, branch: &str) -> Result<String> {
+        debug!("Getting content for {} from {}", file, branch);
+
+        let output = self
+            .executor
+            .execute_command("git", &["show", &format!("{}:{}", branch, file)])
+            .context(format!("Failed to execute git show command for {}", file))?;
+
+        if !output.status.success() {
+            let stderr = String::from_utf8_lossy(&output.stderr);
+            anyhow::bail!("Git show command failed: {}", stderr);
+        }
+
+        let content =
+            String::from_utf8(output.stdout).context("Failed to parse file content as UTF-8")?;
+
+        Ok(content)
+    }
+
+    /// Get file content from a branch, handling common errors
+    pub fn get_branch_content(&self, file: &str, branch: &str) -> String {
+        match self.get_file_content(file, branch) {
+            Ok(content) => content,
+            Err(e) => {
+                // Skip errors for files that might not exist in one branch
+                if !e.to_string().contains("did not match any file") {
+                    log::warn!("Failed to get {} content from {}: {}", file, branch, e);
+                }
+                String::new()
+            }
+        }
+    }
+
+    /// Get all Rust files in the repository
+    pub fn get_all_rust_files(&self) -> Result<Vec<String>> {
+        info!("Getting all Rust files in the repository...");
+
+        let output = self
+            .executor
+            .execute_command("git", &["ls-files", "*.rs"])
+            .context("Failed to execute git ls-files command")?;
+
+        if !output.status.success() {
+            let stderr = String::from_utf8_lossy(&output.stderr);
+            anyhow::bail!("Git ls-files command failed: {}", stderr);
+        }
+
+        let files =
+            String::from_utf8(output.stdout).context("Failed to parse git ls-files output")?;
+
+        let rust_files: Vec<String> = files.lines().map(|line| line.to_owned()).collect();
+
+        info!("Found {} Rust files in total", rust_files.len());
+
+        Ok(rust_files)
+    }
+}
+
+// Default implementation for GitOperations with RealCommandExecutor
+impl Default for GitOperations<RealCommandExecutor> {
+    fn default() -> Self {
+        Self::new(RealCommandExecutor::default())
+    }
+}
+
+// Standalone function for getting changed files from GitHub PR
+pub async fn get_changed_files(
+    octocrab: &Octocrab,
+    owner: &str,
+    repo: &str,
+    pr_number: u64,
+) -> Result<Vec<String>> {
+    info!("Getting changed files from PR #{}...", pr_number);
+
+    let first_files = octocrab
+        .pulls(owner, repo)
+        .list_files(pr_number)
+        .await
+        .context("Failed to list PR files")?;
+
+    let all_files = octocrab
+        .all_pages(first_files)
+        .await
+        .context("Failed to fetch all pages of PR files")?;
+
+    // Filter for Rust files only
+    let rust_files: Vec<String> = all_files
+        .into_iter()
+        .filter(|file| file.filename.ends_with(".rs"))
+        .map(|file| file.filename)
+        .collect();
+
+    info!("Found {} changed Rust files", rust_files.len());
+
+    Ok(rust_files)
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+    use http::Uri;
+    use httpmock::prelude::*;
+    use httpmock::MockServer;
+    use mockall::predicate::*;
+    use serde_json::json;
+    use std::io::{Error as IoError, ErrorKind};
+    use std::os::unix::process::ExitStatusExt;
+    use std::process::{ExitStatus, Output};
+    use std::str::FromStr;
+
+    // Helper function to create mock output
+    fn create_mock_output(status: i32, stdout: &str, stderr: &str) -> std::io::Result<Output> {
+        Ok(Output {
+            status: ExitStatus::from_raw(status),
+            stdout: stdout.as_bytes().to_vec(),
+            stderr: stderr.as_bytes().to_vec(),
+        })
+    }
+
+    // Helper function to create test octocrab
+    fn create_test_octocrab(server: &MockServer) -> Octocrab {
+        let uri = Uri::from_str(&server.base_url()).unwrap();
+        Octocrab::builder().base_uri(uri).unwrap().build().unwrap()
+    }
+
+    #[test]
+    fn test_get_file_content_success() {
+        let mut mock_executor = MockCommandExecutor::new();
+
+        mock_executor
+            .expect_execute_command()
+            .withf(|cmd, args| {
+                cmd == "git"
+                    && args.len() == 2
+                    && args[0] == "show"
+                    && args[1] == "main:src/test.rs"
+            })
+            .times(1)
+            .returning(|_, _| create_mock_output(0, "fn test() {}\n", ""));
+
+        let git_ops = GitOperations::new(mock_executor);
+
+        let result = git_ops.get_file_content("src/test.rs", "main");
+
+        assert!(result.is_ok());
+        assert_eq!(result.unwrap(), "fn test() {}\n");
+    }
+
+    #[test]
+    fn test_get_file_content_command_error() {
+        let mut mock_executor = MockCommandExecutor::new();
+
+        mock_executor
+            .expect_execute_command()
+            .withf(|cmd, args| {
+                cmd == "git"
+                    && args.len() == 2
+                    && args[0] == "show"
+                    && args[1] == "main:src/test.rs"
+            })
+            .times(1)
+            .returning(|_, _| Err(IoError::new(ErrorKind::NotFound, "git command not found")));
+
+        let git_ops = GitOperations::new(mock_executor);
+
+        let result = git_ops.get_file_content("src/test.rs", "main");
+
+        assert!(result.is_err());
+        assert!(result
+            .unwrap_err()
+            .to_string()
+            .contains("Failed to execute git show command"));
+    }
+
+    #[test]
+    fn test_get_file_content_git_error() {
+        let mut mock_executor = MockCommandExecutor::new();
+
+        mock_executor
+            .expect_execute_command()
+            .withf(|cmd, args| {
+                cmd == "git"
+                    && args.len() == 2
+                    && args[0] == "show"
+                    && args[1] == "main:src/nonexistent.rs"
+            })
+            .times(1)
+            .returning(|_, _| {
+                create_mock_output(
+                    1,
+                    "",
+                    "fatal: Path 'src/nonexistent.rs' does not exist in 'main'",
+                )
+            });
+
+        let git_ops = GitOperations::new(mock_executor);
+
+        let result = git_ops.get_file_content("src/nonexistent.rs", "main");
+
+        assert!(result.is_err());
+        assert!(result
+            .unwrap_err()
+            .to_string()
+            .contains("Git show command failed"));
+    }
+
+    #[test]
+    fn test_get_file_content_invalid_utf8() {
+        let mut mock_executor = MockCommandExecutor::new();
+
+        // Create invalid UTF-8 output
+        let invalid_utf8 = vec![0, 159, 146, 150]; // Invalid UTF-8 sequence
+
+        mock_executor
+            .expect_execute_command()
+            .withf(|cmd, args| {
+                cmd == "git"
+                    && args.len() == 2
+                    && args[0] == "show"
+                    && args[1] == "main:src/binary.rs"
+            })
+            .times(1)
+            .returning(move |_, _| {
+                Ok(Output {
+                    status: ExitStatus::from_raw(0),
+                    stdout: invalid_utf8.clone(),
+                    stderr: Vec::new(),
+                })
+            });
+
+        let git_ops = GitOperations::new(mock_executor);
+
+        let result = git_ops.get_file_content("src/binary.rs", "main");
+
+        assert!(result.is_err());
+        assert!(result
+            .unwrap_err()
+            .to_string()
+            .contains("Failed to parse file content as UTF-8"));
+    }
+
+    #[test]
+    fn test_get_branch_content_success() {
+        let mut mock_executor = MockCommandExecutor::new();
+
+        mock_executor
+            .expect_execute_command()
+            .withf(|cmd, args| {
+                cmd == "git"
+                    && args.len() == 2
+                    && args[0] == "show"
+                    && args[1] == "main:src/test.rs"
+            })
+            .times(1)
+            .returning(|_, _| create_mock_output(0, "fn test() {}\n", ""));
+
+        let git_ops = GitOperations::new(mock_executor);
+
+        let result = git_ops.get_branch_content("src/test.rs", "main");
+
+        assert_eq!(result, "fn test() {}\n");
+    }
+
+    #[test]
+    fn test_get_branch_content_file_not_found() {
+        let mut mock_executor = MockCommandExecutor::new();
+
+        mock_executor
+            .expect_execute_command()
+            .withf(|cmd, args| {
+                cmd == "git"
+                    && args.len() == 2
+                    && args[0] == "show"
+                    && args[1] == "main:src/nonexistent.rs"
+            })
+            .times(1)
+            .returning(|_, _| {
+                create_mock_output(
+                    1,
+                    "",
+                    "fatal: Path 'src/nonexistent.rs' does not exist in 'main'",
+                )
+            });
+
+        let git_ops = GitOperations::new(mock_executor);
+
+        let result = git_ops.get_branch_content("src/nonexistent.rs", "main");
+
+        assert_eq!(result, ""); // Should return empty string for non-existent file
+    }
+
+    #[test]
+    fn test_get_branch_content_other_error() {
+        let mut mock_executor = MockCommandExecutor::new();
+
+        mock_executor
+            .expect_execute_command()
+            .withf(|cmd, args| {
+                cmd == "git"
+                    && args.len() == 2
+                    && args[0] == "show"
+                    && args[1] == "invalid-branch:src/test.rs"
+            })
+            .times(1)
+            .returning(|_, _| {
+                create_mock_output(1, "", "fatal: invalid branch name: invalid-branch")
+            });
+
+        let git_ops = GitOperations::new(mock_executor);
+
+        let result = git_ops.get_branch_content("src/test.rs", "invalid-branch");
+
+        assert_eq!(result, ""); // Should return empty string for any error
+    }
+
+    #[test]
+    fn test_get_all_rust_files_success() {
+        let mut mock_executor = MockCommandExecutor::new();
+
+        mock_executor
+            .expect_execute_command()
+            .withf(|cmd, args| {
+                cmd == "git" && args.len() == 2 && args[0] == "ls-files" && args[1] == "*.rs"
+            })
+            .times(1)
+            .returning(|_, _| {
+                create_mock_output(0, "src/main.rs\nsrc/lib.rs\nsrc/module.rs\n", "")
+            });
+
+        let git_ops = GitOperations::new(mock_executor);
+
+        let result = git_ops.get_all_rust_files();
+
+        assert!(result.is_ok());
+        let files = result.unwrap();
+        assert_eq!(files.len(), 3);
+        assert_eq!(files[0], "src/main.rs");
+        assert_eq!(files[1], "src/lib.rs");
+        assert_eq!(files[2], "src/module.rs");
+    }
+
+    #[test]
+    fn test_get_all_rust_files_empty_repo() {
+        let mut mock_executor = MockCommandExecutor::new();
+
+        mock_executor
+            .expect_execute_command()
+            .withf(|cmd, args| {
+                cmd == "git" && args.len() == 2 && args[0] == "ls-files" && args[1] == "*.rs"
+            })
+            .times(1)
+            .returning(|_, _| create_mock_output(0, "", ""));
+
+        let git_ops = GitOperations::new(mock_executor);
+
+        let result = git_ops.get_all_rust_files();
+
+        assert!(result.is_ok());
+        let files = result.unwrap();
+        assert_eq!(files.len(), 0); // Should return empty list for repo with no Rust files
+    }
+
+    #[test]
+    fn test_get_all_rust_files_command_error() {
+        let mut mock_executor = MockCommandExecutor::new();
+
+        mock_executor
+            .expect_execute_command()
+            .withf(|cmd, args| {
+                cmd == "git" && args.len() == 2 && args[0] == "ls-files" && args[1] == "*.rs"
+            })
+            .times(1)
+            .returning(|_, _| Err(IoError::new(ErrorKind::NotFound, "git command not found")));
+
+        let git_ops = GitOperations::new(mock_executor);
+
+        let result = git_ops.get_all_rust_files();
+
+        assert!(result.is_err());
+        assert!(result
+            .unwrap_err()
+            .to_string()
+            .contains("Failed to execute git ls-files command"));
+    }
+
+    #[test]
+    fn test_get_all_rust_files_git_error() {
+        let mut mock_executor = MockCommandExecutor::new();
+
+        mock_executor
+            .expect_execute_command()
+            .withf(|cmd, args| {
+                cmd == "git" && args.len() == 2 && args[0] == "ls-files" && args[1] == "*.rs"
+            })
+            .times(1)
+            .returning(|_, _| create_mock_output(1, "", "fatal: not a git repository"));
+
+        let git_ops = GitOperations::new(mock_executor);
+
+        let result = git_ops.get_all_rust_files();
+
+        assert!(result.is_err());
+        assert!(result
+            .unwrap_err()
+            .to_string()
+            .contains("Git ls-files command failed"));
+    }
+
+    // Tests for get_changed_files
+    #[tokio::test]
+    async fn test_get_changed_files_success() {
+        let server = MockServer::start();
+
+        let list_files_mock = server.mock(|when, then| {
+            when.method(GET)
+                .path("/repos/test-owner/test-repo/pulls/123/files");
+
+            then.status(200)
+                .header("content-type", "application/json")
+                .json_body(json!([
+                    {
+                        "sha": "abc123",
+                        "filename": "src/main.rs",
+                        "status": "modified",
+                        "additions": 10,
+                        "deletions": 5,
+                        "changes": 15,
+                        "blob_url": "https://github.com/test-owner/test-repo/blob/abc123/src/main.rs",
+                        "raw_url": "https://github.com/test-owner/test-repo/raw/abc123/src/main.rs",
+                        "contents_url": "https://api.github.com/repos/test-owner/test-repo/contents/src/main.rs?ref=abc123"
+                    },
+                    {
+                        "sha": "def456",
+                        "filename": "src/lib.rs",
+                        "status": "modified",
+                        "additions": 7,
+                        "deletions": 3,
+                        "changes": 10,
+                        "blob_url": "https://github.com/test-owner/test-repo/blob/def456/src/lib.rs",
+                        "raw_url": "https://github.com/test-owner/test-repo/raw/def456/src/lib.rs",
+                        "contents_url": "https://api.github.com/repos/test-owner/test-repo/contents/src/lib.rs?ref=def456"
+                    },
+                    {
+                        "sha": "ghi789",
+                        "filename": "README.md",
+                        "status": "modified",
+                        "additions": 2,
+                        "deletions": 0,
+                        "changes": 2,
+                        "blob_url": "https://github.com/test-owner/test-repo/blob/ghi789/README.md",
+                        "raw_url": "https://github.com/test-owner/test-repo/raw/ghi789/README.md",
+                        "contents_url": "https://api.github.com/repos/test-owner/test-repo/contents/README.md?ref=ghi789"
+                    }
+                ]));
+        });
+
+        let octocrab = create_test_octocrab(&server);
+
+        let result = get_changed_files(&octocrab, "test-owner", "test-repo", 123).await;
+
+        assert!(result.is_ok());
+        let files = result.unwrap();
+        assert_eq!(files.len(), 2); // Should only include the .rs files
+        assert_eq!(files[0], "src/main.rs");
+        assert_eq!(files[1], "src/lib.rs");
+
+        list_files_mock.assert();
+    }
+
+    #[tokio::test]
+    async fn test_get_changed_files_no_rust_files() {
+        let server = MockServer::start();
+
+        let list_files_mock = server.mock(|when, then| {
+            when.method(GET)
+                .path("/repos/test-owner/test-repo/pulls/123/files");
+
+            then.status(200)
+                .header("content-type", "application/json")
+                .json_body(json!([
+                    {
+                        "sha": "abc123",
+                        "filename": "README.md",
+                        "status": "modified",
+                        "additions": 10,
+                        "deletions": 5,
+                        "changes": 15,
+                        "blob_url": "https://github.com/test-owner/test-repo/blob/abc123/README.md",
+                        "raw_url": "https://github.com/test-owner/test-repo/raw/abc123/README.md",
+                        "contents_url": "https://api.github.com/repos/test-owner/test-repo/contents/README.md?ref=abc123"
+                    },
+                    {
+                        "sha": "def456",
+                        "filename": "LICENSE",
+                        "status": "modified",
+                        "additions": 7,
+                        "deletions": 3,
+                        "changes": 10,
+                        "blob_url": "https://github.com/test-owner/test-repo/blob/def456/LICENSE",
+                        "raw_url": "https://github.com/test-owner/test-repo/raw/def456/LICENSE",
+                        "contents_url": "https://api.github.com/repos/test-owner/test-repo/contents/LICENSE?ref=def456"
+                    }
+                ]));
+        });
+
+        let octocrab = create_test_octocrab(&server);
+
+        let result = get_changed_files(&octocrab, "test-owner", "test-repo", 123).await;
+
+        assert!(result.is_ok());
+        let files = result.unwrap();
+        assert_eq!(files.len(), 0); // Should return empty list as no Rust files changed
+
+        list_files_mock.assert();
+    }
+
+    #[tokio::test]
+    async fn test_get_changed_files_error() {
+        let server = MockServer::start();
+
+        let list_files_mock = server.mock(|when, then| {
+            when.method(GET)
+                .path("/repos/test-owner/test-repo/pulls/123/files");
+
+            then.status(404)
+                .header("content-type", "application/json")
+                .json_body(json!({
+                    "message": "Not Found",
+                    "documentation_url": "https://docs.github.com/rest/pulls/pulls#list-pull-requests-files"
+                }));
+        });
+
+        let octocrab = create_test_octocrab(&server);
+
+        let result = get_changed_files(&octocrab, "test-owner", "test-repo", 123).await;
+
+        assert!(result.is_err());
+        assert!(result
+            .unwrap_err()
+            .to_string()
+            .contains("Failed to list PR files"));
+
+        list_files_mock.assert();
+    }
+}
diff --git a/.github/actions/clippy-annotation-reporter/src/analyzer/mod.rs b/.github/actions/clippy-annotation-reporter/src/analyzer/mod.rs
new file mode 100644
index 0000000000..de82fbe68b
--- /dev/null
+++ b/.github/actions/clippy-annotation-reporter/src/analyzer/mod.rs
@@ -0,0 +1,203 @@
+// Copyright 2024-Present Datadog, Inc. https://www.datadoghq.com/
+// SPDX-License-Identifier: Apache-2.0
+
+//! Main analyzer module for clippy-annotation-reporter
+//!
+//! This module is responsible for analyzing clippy annotations
+//! in Rust code across different branches.
+
+use crate::analyzer::annotation::{
+    count_annotations_by_crate, count_annotations_by_rule, create_annotation_regex,
+    find_annotations,
+};
+use crate::analyzer::git::{get_changed_files, GitOperations};
+use anyhow::Result;
+use log::{debug, info, warn};
+use octocrab::Octocrab;
+use std::collections::{HashMap, HashSet};
+use std::rc::Rc;
+
+mod annotation;
+mod crate_detection;
+mod git;
+
+/// Represents a clippy annotation in code
+#[derive(Debug, Clone)]
+pub struct ClippyAnnotation {
+    pub file: Rc<String>,
+    pub rule: Rc<String>,
+}
+
+/// Result of annotation analysis
+pub struct AnalysisResult {
+    pub base_annotations: Vec<ClippyAnnotation>,
+    pub head_annotations: Vec<ClippyAnnotation>,
+    pub base_counts: HashMap<Rc<String>, usize>,
+    pub head_counts: HashMap<Rc<String>, usize>,
+    pub changed_files: HashSet<String>,
+    pub base_crate_counts: HashMap<Rc<String>, usize>,
+    pub head_crate_counts: HashMap<Rc<String>, usize>,
+}
+
+pub async fn run_analysis(
+    octocrab: &Octocrab,
+    owner: &str,
+    repo: &str,
+    pr_number: u64,
+    base_branch: &str,
+    head_branch: &str,
+    rules: &[String],
+) -> Result<AnalysisResult> {
+    let changed_files = get_changed_files(octocrab, owner, repo, pr_number).await?;
+
+    if changed_files.is_empty() {
+        return Err(anyhow::anyhow!("No Rust files changed in this PR"));
+    }
+    let git_ops = GitOperations::default();
+
+    let all_files = git_ops.get_all_rust_files()?;
+    let pr_analysis = analyze_annotations(&changed_files, base_branch, head_branch, rules)?;
+    let (repo_base_crate_counts, repo_head_crate_counts) =
+        analyze_all_files_for_crates(&all_files, base_branch, head_branch, rules)?;
+
+    Ok(AnalysisResult {
+        base_annotations: pr_analysis.base_annotations,
+        head_annotations: pr_analysis.head_annotations,
+        base_counts: pr_analysis.base_counts,
+        head_counts: pr_analysis.head_counts,
+        changed_files: pr_analysis.changed_files,
+        base_crate_counts: repo_base_crate_counts,
+        head_crate_counts: repo_head_crate_counts,
+    })
+}
+/// Analyze clippy annotations in base and head branches
+fn analyze_annotations(
+    files: &[String],
+    base_branch: &str,
+    head_branch: &str,
+    rules: &[String],
+) -> Result<AnalysisResult> {
+    debug!("Analyzing clippy annotations in {} files...", files.len());
+
+    // Create a regex for matching clippy allow annotations
+    let annotation_regex = create_annotation_regex(rules)?;
+
+    let mut base_annotations = Vec::new();
+    let mut head_annotations = Vec::new();
+    let mut changed_files = HashSet::new();
+
+    // Cache for rule Rc instances to avoid duplicates
+    let mut rule_cache = HashMap::new();
+    let git_ops = GitOperations::default();
+    for file in files {
+        changed_files.insert(file.clone());
+
+        // most likely reason for errors is the files don't exist in the respective branch.
+
+        let base_content = match git_ops.get_file_content(file, base_branch) {
+            Ok(content) => content,
+            Err(e) => {
+                warn!("Failed to get {} content from {}: {}", file, base_branch, e);
+                String::new()
+            }
+        };
+
+        let head_content = match git_ops.get_file_content(file, head_branch) {
+            Ok(content) => content,
+            Err(e) => {
+                warn!("Failed to get {} content from {}: {}", file, head_branch, e);
+                String::new()
+            }
+        };
+
+        // Find annotations in base branch
+        find_annotations(
+            &mut base_annotations,
+            file,
+            &base_content,
+            &annotation_regex,
+            &mut rule_cache,
+        );
+
+        // Find annotations in head branch
+        find_annotations(
+            &mut head_annotations,
+            file,
+            &head_content,
+            &annotation_regex,
+            &mut rule_cache,
+        );
+    }
+
+    // Count annotations by rule
+    let base_counts = count_annotations_by_rule(&base_annotations);
+    let head_counts = count_annotations_by_rule(&head_annotations);
+
+    // Count annotations by crate
+    let base_crate_counts = count_annotations_by_crate(&base_annotations);
+    let head_crate_counts = count_annotations_by_crate(&head_annotations);
+
+    info!(
+        "Analysis complete. Found {} annotations in base branch and {} in head branch",
+        base_annotations.len(),
+        head_annotations.len()
+    );
+
+    Ok(AnalysisResult {
+        base_annotations,
+        head_annotations,
+        base_counts,
+        head_counts,
+        changed_files,
+        base_crate_counts,
+        head_crate_counts,
+    })
+}
+
+/// Analyze all files just for crate-level statistics
+fn analyze_all_files_for_crates(
+    files: &[String],
+    base_branch: &str,
+    head_branch: &str,
+    rules: &[String],
+) -> Result<(HashMap<Rc<String>, usize>, HashMap<Rc<String>, usize>)> {
+    info!(
+        "Analyzing all {} Rust files for crate-level statistics...",
+        files.len()
+    );
+
+    let annotation_regex = create_annotation_regex(rules)?;
+
+    let mut base_annotations = Vec::new();
+    let mut head_annotations = Vec::new();
+    let mut rule_cache = HashMap::new();
+
+    let git_ops = GitOperations::default();
+    for file in files {
+        let base_content = git_ops.get_branch_content(file, base_branch);
+        let head_content = git_ops.get_branch_content(file, head_branch);
+
+        // Find annotations in base branch
+        find_annotations(
+            &mut base_annotations,
+            file,
+            &base_content,
+            &annotation_regex,
+            &mut rule_cache,
+        );
+
+        // Find annotations in head branch
+        find_annotations(
+            &mut head_annotations,
+            file,
+            &head_content,
+            &annotation_regex,
+            &mut rule_cache,
+        );
+    }
+
+    let base_crate_counts = count_annotations_by_crate(&base_annotations);
+    let head_crate_counts = count_annotations_by_crate(&head_annotations);
+
+    Ok((base_crate_counts, head_crate_counts))
+}

From d855eee42e9ef2480aa89e380d8e47f79fcca0a0 Mon Sep 17 00:00:00 2001
From: Edmund Kump <edmund.kump@datadoghq.com>
Date: Sat, 31 May 2025 22:44:41 -0400
Subject: [PATCH 3/5] add the config module to clippy-annotation-reporter. This
 module combines env vars and CLI args to get relevant info about the PR being
 analyzed.

---
 .../clippy-annotation-reporter/src/config.rs  | 469 ++++++++++++++++++
 1 file changed, 469 insertions(+)
 create mode 100644 .github/actions/clippy-annotation-reporter/src/config.rs

diff --git a/.github/actions/clippy-annotation-reporter/src/config.rs b/.github/actions/clippy-annotation-reporter/src/config.rs
new file mode 100644
index 0000000000..1dfa02814e
--- /dev/null
+++ b/.github/actions/clippy-annotation-reporter/src/config.rs
@@ -0,0 +1,469 @@
+// Copyright 2024-Present Datadog, Inc. https://www.datadoghq.com/
+// SPDX-License-Identifier: Apache-2.0
+
+//! Configuration for the clippy-annotation-reporter
+//!
+//! This module handles all configuration-related logic including
+//! command-line arguments, GitHub context, and environment variables.
+
+use anyhow::{Context as _, Result};
+use clap::Parser;
+use log::{debug, warn};
+use serde_json::Value;
+use std::env;
+use std::fs;
+
+/// Command-line arguments for the clippy-annotation-reporter
+#[derive(Parser, Clone, Debug)]
+#[command(name = "clippy-annotation-reporter")]
+#[command(about = "Reports changes in clippy allow annotations")]
+pub struct Args {
+    /// GitHub token for API access
+    #[arg(long)]
+    pub token: String,
+    /// Comma-separated list of clippy rules to track
+    #[arg(
+        long,
+        default_value = "unwrap_used,expect_used,todo,unimplemented,panic,unreachable"
+    )]
+    pub rules: String,
+    /// GitHub repository (owner/repo) - defaults to current repository
+    #[arg(long)]
+    pub repo: Option<String>,
+    /// Pull request number - defaults to PR from event context
+    #[arg(long)]
+    pub pr: Option<u64>,
+    /// Base branch to compare against (defaults to the PR's base branch)
+    #[arg(long)]
+    pub base_branch: Option<String>,
+}
+
+impl Args {
+    /// Create a new Args instance from command-line arguments
+    pub fn from_cli() -> Result<Self> {
+        let mut args = Self::parse();
+
+        if args.token.is_empty() {
+            args.token = env::var("GITHUB_TOKEN").map_err(|_| {
+                anyhow::anyhow!("No token provided and GITHUB_TOKEN environment variable not set")
+            })?;
+        }
+
+        Ok(args)
+    }
+
+    /// Parse the rules list from the comma-separated string
+    pub fn parse_rules(&self) -> Vec<String> {
+        self.rules.split(',').map(|s| s.trim().to_owned()).collect()
+    }
+}
+
+/// GitHub event context extracted from environment
+#[derive(Clone, Debug)]
+pub struct GitHubContext {
+    pub repository: String,
+    pub pr_number: u64,
+    pub base_ref: String,
+    pub head_ref: String,
+}
+
+impl GitHubContext {
+    /// Try to extract GitHub context from environment variables and event file
+    pub fn from_env() -> Result<Self> {
+        // Get repository from env
+        let repository = env::var("GITHUB_REPOSITORY")
+            .context("GITHUB_REPOSITORY environment variable not set")?;
+
+        // Get event name (pull_request, push, etc.)
+        let event_name = env::var("GITHUB_EVENT_NAME")
+            .context("GITHUB_EVENT_NAME environment variable not set")?;
+
+        // For PR events, get PR number and refs from event payload
+        let event_path = env::var("GITHUB_EVENT_PATH")
+            .context("GITHUB_EVENT_PATH environment variable not set")?;
+
+        let event_data =
+            fs::read_to_string(event_path).context("Failed to read GitHub event file")?;
+
+        let event_json: Value =
+            serde_json::from_str(&event_data).context("Failed to parse GitHub event JSON")?;
+
+        // Extract values from event JSON
+        let (pr_number, base_ref, head_ref) = match event_name.as_str() {
+            "pull_request" | "pull_request_target" => {
+                let pr_number = event_json["pull_request"]["number"]
+                    .as_u64()
+                    .context("Could not find pull_request.number in event data")?;
+
+                // Direct access to base.ref
+                let base_ref = match event_json["pull_request"]["base"]["ref"].as_str() {
+                    Some(val) => val.to_owned(),
+                    None => {
+                        warn!(
+                            "Could not extract base.ref as string, Falling back to main as base branch",
+                        );
+
+                        "main".to_owned()
+                    }
+                };
+
+                // Direct access to head.ref
+                let head_ref = match event_json["pull_request"]["head"]["ref"].as_str() {
+                    Some(val) => val.to_owned(),
+                    None => {
+                        warn!("Warning: Could not extract head.ref as string");
+
+                        String::new()
+                    }
+                };
+
+                (pr_number, base_ref, head_ref)
+            }
+            _ => {
+                // For other events, default values (will be overridden by args)
+                (0, "main".to_owned(), "".to_owned())
+            }
+        };
+
+        debug!(
+            "Extracted PR: {}, base: {}, head: {}",
+            pr_number, base_ref, head_ref
+        );
+
+        Ok(GitHubContext {
+            repository,
+            pr_number,
+            base_ref,
+            head_ref,
+        })
+    }
+}
+
+/// Configuration combining command-line arguments and GitHub context
+#[derive(Debug)]
+pub struct Config {
+    pub repository: String,
+    pub pr_number: u64,
+    pub base_branch: String,
+    pub head_branch: String,
+    pub rules: Vec<String>,
+    pub token: String,
+    pub owner: String,
+    pub repo: String,
+}
+
+impl Config {
+    /// Create a new configuration from command-line arguments and GitHub context
+    pub fn new(mut args: Args, github_ctx: GitHubContext) -> Result<Self> {
+        // Check for empty token and try to get from environment if needed
+        if args.token.is_empty() {
+            args.token = env::var("GITHUB_TOKEN").map_err(|_| {
+                anyhow::anyhow!("No token provided and GITHUB_TOKEN environment variable not set")
+            })?;
+        }
+
+        // Use provided values from args if available, otherwise use context
+        let repository = args.repo.as_ref().unwrap_or(&github_ctx.repository);
+
+        let pr_number = match args.pr {
+            Some(pr) => pr,
+            None => {
+                if github_ctx.pr_number == 0 {
+                    return Err(anyhow::anyhow!(
+                        "No PR number found in event context. Please provide --pr argument."
+                    ));
+                }
+                github_ctx.pr_number
+            }
+        };
+
+        // Set base branch (default to the PR's base branch or 'main')
+        let base_branch = match args.base_branch.as_ref() {
+            Some(branch) => {
+                if !branch.is_empty() {
+                    format!("origin/{}", branch)
+                } else if !github_ctx.base_ref.is_empty() {
+                    format!("origin/{}", github_ctx.base_ref)
+                } else {
+                    "origin/main".to_owned()
+                }
+            }
+            _ => "origin/main".to_owned(),
+        };
+
+        // Set head branch (PR's head branch)
+        let head_branch = if !github_ctx.head_ref.is_empty() {
+            format!("origin/{}", github_ctx.head_ref)
+        } else {
+            env::var("GITHUB_HEAD_REF")
+                .map(|ref_name| format!("origin/{}", ref_name))
+                .unwrap_or_else(|_| "HEAD".to_owned())
+        };
+
+        // Parse repository into owner and repo
+        let parts: Vec<&str> = repository.split('/').collect();
+        if parts.len() != 2 {
+            return Err(anyhow::anyhow!(
+                "Invalid repository format. Expected 'owner/repo', got '{}'",
+                repository
+            ));
+        }
+
+        let owner = parts[0].to_owned();
+        let repo = parts[1].to_owned();
+
+        let rules = args.parse_rules();
+
+        Ok(Config {
+            repository: repository.to_owned(),
+            pr_number,
+            base_branch,
+            head_branch,
+            rules,
+            owner,
+            repo,
+            token: args.token,
+        })
+    }
+}
+
+/// Builder for creating Config instances
+pub struct ConfigBuilder {
+    args: Option<Args>,
+    github_ctx: Option<GitHubContext>,
+}
+
+impl ConfigBuilder {
+    /// Create a new empty builder
+    pub fn new() -> Self {
+        Self {
+            args: None,
+            github_ctx: None,
+        }
+    }
+
+    /// Build the Config instance, using defaults for any unset values
+    pub fn build(self) -> Result<Config> {
+        // Get command line arguments if not provided
+        let args = match self.args {
+            Some(args) => args,
+            None => Args::from_cli()?,
+        };
+
+        // Get GitHub context if not provided
+        let github_ctx = match self.github_ctx {
+            Some(ctx) => ctx,
+            None => GitHubContext::from_env()?,
+        };
+
+        Config::new(args, github_ctx)
+    }
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+    use std::env;
+    use std::fs::File;
+    use std::io::Write;
+    use tempfile::tempdir;
+
+    // Helper function to create a mock GitHub event file
+    fn create_mock_event_file(content: &str) -> (tempfile::TempDir, String) {
+        let dir = tempdir().unwrap();
+        let file_path = dir.path().join("event.json");
+        let mut file = File::create(&file_path).unwrap();
+        write!(file, "{}", content).unwrap();
+        (dir, file_path.to_string_lossy().to_string())
+    }
+
+    // Helper to set and reset environment variables safely
+    struct EnvGuard {
+        key: String,
+        original_value: Option<String>,
+    }
+
+    impl EnvGuard {
+        fn new(key: &str, value: &str) -> Self {
+            let original_value = env::var(key).ok();
+            env::set_var(key, value);
+            Self {
+                key: key.to_string(),
+                original_value,
+            }
+        }
+    }
+
+    impl Drop for EnvGuard {
+        fn drop(&mut self) {
+            match &self.original_value {
+                Some(val) => env::set_var(&self.key, val),
+                None => env::remove_var(&self.key),
+            }
+        }
+    }
+
+    // Test that directly creates Args without the builder
+    #[test]
+    fn test_args_parse_rules() {
+        let args = Args {
+            token: "dummy_token".to_string(),
+            rules: "unwrap_used,expect_used,panic".to_string(),
+            repo: None,
+            pr: None,
+            base_branch: None,
+        };
+
+        let rules = args.parse_rules();
+        assert_eq!(rules.len(), 3);
+        assert_eq!(rules[0], "unwrap_used");
+        assert_eq!(rules[1], "expect_used");
+        assert_eq!(rules[2], "panic");
+    }
+
+    #[test]
+    fn test_args_parse_rules_with_spaces() {
+        let args = Args {
+            token: "dummy_token".to_string(),
+            rules: "unwrap_used, expect_used , panic".to_string(),
+            repo: None,
+            pr: None,
+            base_branch: None,
+        };
+
+        let rules = args.parse_rules();
+        assert_eq!(rules.len(), 3);
+        assert_eq!(rules[0], "unwrap_used");
+        assert_eq!(rules[1], "expect_used");
+        assert_eq!(rules[2], "panic");
+    }
+
+    // Test that uses environment variables for GitHub context
+    #[test]
+    fn test_github_context_from_env() {
+        // Setup mock environment and event file
+        let event_json = r#"
+        {
+            "pull_request": {
+                "number": 123,
+                "base": {
+                    "ref": "main"
+                },
+                "head": {
+                    "ref": "feature-branch"
+                }
+            }
+        }
+        "#;
+
+        let (dir, event_path) = create_mock_event_file(event_json);
+
+        // Set required environment variables
+        let _guard1 = EnvGuard::new("GITHUB_REPOSITORY", "owner/repo");
+        let _guard2 = EnvGuard::new("GITHUB_EVENT_NAME", "pull_request");
+        let _guard3 = EnvGuard::new("GITHUB_EVENT_PATH", &event_path);
+
+        let ctx = GitHubContext::from_env().unwrap();
+
+        assert_eq!(ctx.repository, "owner/repo");
+        assert_eq!(ctx.pr_number, 123);
+        assert_eq!(ctx.base_ref, "main");
+        assert_eq!(ctx.head_ref, "feature-branch");
+
+        drop(dir);
+    }
+
+    // Test that directly creates Config
+    #[test]
+    fn test_config_new() {
+        let args = Args {
+            token: "test_token".to_string(),
+            rules: "unwrap_used,expect_used".to_string(),
+            repo: Some("custom_owner/custom_repo".to_string()),
+            pr: Some(456),
+            base_branch: Some("develop".to_string()),
+        };
+
+        let github_ctx = GitHubContext {
+            repository: "default_owner/default_repo".to_string(),
+            pr_number: 123,
+            base_ref: "main".to_string(),
+            head_ref: "feature".to_string(),
+        };
+
+        let config = Config::new(args, github_ctx).unwrap();
+
+        // Check that args values are used when provided
+        assert_eq!(config.repository, "custom_owner/custom_repo");
+        assert_eq!(config.pr_number, 456);
+        assert_eq!(config.base_branch, "origin/develop");
+        assert_eq!(config.head_branch, "origin/feature");
+        assert_eq!(config.owner, "custom_owner");
+        assert_eq!(config.repo, "custom_repo");
+        assert_eq!(config.rules.len(), 2);
+        assert_eq!(config.rules[0], "unwrap_used");
+        assert_eq!(config.rules[1], "expect_used");
+        assert_eq!(config.token, "test_token");
+    }
+
+    // Test using mocked environment for token
+    #[test]
+    fn test_empty_token_uses_env_token() {
+        // Create a mock GitHub event file
+        let event_json =
+            r#"{"pull_request":{"number":123,"base":{"ref":"main"},"head":{"ref":"feature"}}}"#;
+        let (dir, event_path) = create_mock_event_file(event_json);
+
+        // Set up GitHub context environment
+        let _repo_guard = EnvGuard::new("GITHUB_REPOSITORY", "owner/repo");
+        let _event_guard = EnvGuard::new("GITHUB_EVENT_NAME", "pull_request");
+        let _path_guard = EnvGuard::new("GITHUB_EVENT_PATH", &event_path);
+
+        // Set the token environment variable
+        let _token_guard = EnvGuard::new("GITHUB_TOKEN", "env_token");
+
+        // Create args and context directly
+        let args = Args {
+            token: "".to_string(), // Empty token should trigger using env var
+            rules: "unwrap_used".to_string(),
+            repo: Some("owner/repo".to_string()),
+            pr: Some(123),
+            base_branch: None,
+        };
+
+        let github_ctx = GitHubContext::from_env().unwrap();
+
+        // Test Config::new directly
+        let config = Config::new(args, github_ctx).unwrap();
+
+        // Should use token from environment
+        assert_eq!(config.token, "env_token");
+
+        drop(dir);
+    }
+
+    #[test]
+    fn test_config_new_invalid_repo_format() {
+        let args = Args {
+            token: "test_token".to_string(),
+            rules: "unwrap_used".to_string(),
+            repo: Some("invalid-format".to_string()),
+            pr: Some(123),
+            base_branch: None,
+        };
+
+        let github_ctx = GitHubContext {
+            repository: "default_owner/default_repo".to_string(),
+            pr_number: 0,
+            base_ref: "".to_string(),
+            head_ref: "".to_string(),
+        };
+
+        let result = Config::new(args, github_ctx);
+        assert!(result.is_err());
+        assert!(result
+            .unwrap_err()
+            .to_string()
+            .contains("Invalid repository format"));
+    }
+}

From 5dcd2ad70200622a86b0f6979cdbe23d650f2156 Mon Sep 17 00:00:00 2001
From: Edmund Kump <edmund.kump@datadoghq.com>
Date: Sat, 31 May 2025 22:44:53 -0400
Subject: [PATCH 4/5] add the commenter module to clippy-annotation-reporter.
 This takes the finished report and comments it on the PR. it checks for
 existing comments and updates them instead of repeatedly posting a new
 comment for every PR change.

---
 .../src/commenter.rs                          | 515 ++++++++++++++++++
 1 file changed, 515 insertions(+)
 create mode 100644 .github/actions/clippy-annotation-reporter/src/commenter.rs

diff --git a/.github/actions/clippy-annotation-reporter/src/commenter.rs b/.github/actions/clippy-annotation-reporter/src/commenter.rs
new file mode 100644
index 0000000000..536f229f98
--- /dev/null
+++ b/.github/actions/clippy-annotation-reporter/src/commenter.rs
@@ -0,0 +1,515 @@
+// Copyright 2024-Present Datadog, Inc. https://www.datadoghq.com/
+// SPDX-License-Identifier: Apache-2.0
+
+//! Commenter module for clippy-annotation-reporter
+//!
+//! This module handles interactions with GitHub for commenting on PRs,
+//! including finding existing comments and updating or creating comments.
+
+use anyhow::{Context as _, Result};
+use log::{error, info};
+use octocrab::Octocrab;
+
+/// Post or update a comment on a PR with the given report
+pub async fn post_comment(
+    octocrab: &Octocrab,
+    owner: &str,
+    repo: &str,
+    pr_number: u64,
+    report: String,
+    signature: Option<&str>,
+) -> Result<()> {
+    // Use the provided signature or default
+    let signature = signature.unwrap_or("<!-- clippy-annotation-reporter-comment -->");
+
+    // Add the signature to the report
+    let report_with_signature = format!("{}\n\n{}", report, signature);
+
+    // Search for existing comment by the bot
+    info!("Checking for existing comment on PR #{}", pr_number);
+    let existing_comment =
+        find_existing_comment(octocrab, owner, repo, pr_number, signature).await?;
+
+    // Update existing comment or create a new one
+    if let Some(comment_id) = existing_comment {
+        info!("Updating existing comment #{}", comment_id);
+        octocrab
+            .issues(owner, repo)
+            .update_comment(comment_id.into(), report_with_signature)
+            .await
+            .context("Failed to update existing comment")?;
+    } else {
+        info!("Creating new comment on PR #{}", pr_number);
+        octocrab
+            .issues(owner, repo)
+            .create_comment(pr_number, report_with_signature)
+            .await
+            .context("Failed to post comment to PR")?;
+    }
+
+    Ok(())
+}
+
+/// Find existing comment by the bot on a PR
+async fn find_existing_comment(
+    octocrab: &Octocrab,
+    owner: &str,
+    repo: &str,
+    pr_number: u64,
+    signature: &str,
+) -> Result<Option<u64>> {
+    // Get all comments on the PR
+    let page = octocrab
+        .issues(owner, repo)
+        .list_comments(pr_number)
+        .per_page(100)
+        .send()
+        .await
+        .context("Failed to list PR comments")?;
+
+    let all_pages = octocrab
+        .all_pages(page)
+        .await
+        .context("Failed to fetch all pages of comments")?;
+
+    for comment in all_pages {
+        if comment
+            .body
+            .as_ref()
+            .is_some_and(|body| body.contains(signature))
+        {
+            return Ok(Some(*comment.id));
+        }
+    }
+
+    // No matching comment found
+    Ok(None)
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+    use http::Uri;
+    use httpmock::prelude::*;
+    use serde_json::json;
+    use std::str::FromStr;
+
+    /// Helper function to create an Octocrab instance that uses our mock server
+    fn create_test_octocrab(server: &MockServer) -> Octocrab {
+        let uri = Uri::from_str(&server.base_url()).unwrap();
+        Octocrab::builder().base_uri(uri).unwrap().build().unwrap()
+    }
+
+    /// Helper function to create a standard user object for responses
+    fn standard_user() -> serde_json::Value {
+        json!({
+            "login": "octocat",
+            "id": 1,
+            "node_id": "MDQ6VXNlcjE=",
+            "avatar_url": "https://github.com/images/error/octocat_happy.gif",
+            "gravatar_id": "",
+            "url": "https://api.github.com/users/octocat",
+            "html_url": "https://github.com/octocat",
+            "followers_url": "https://api.github.com/users/octocat/followers",
+            "following_url": "https://api.github.com/users/octocat/following{/other_user}",
+            "gists_url": "https://api.github.com/users/octocat/gists{/gist_id}",
+            "starred_url": "https://api.github.com/users/octocat/starred{/owner}{/repo}",
+            "subscriptions_url": "https://api.github.com/users/octocat/subscriptions",
+            "organizations_url": "https://api.github.com/users/octocat/orgs",
+            "repos_url": "https://api.github.com/users/octocat/repos",
+            "events_url": "https://api.github.com/users/octocat/events{/privacy}",
+            "received_events_url": "https://api.github.com/users/octocat/received_events",
+            "type": "User",
+            "site_admin": false
+        })
+    }
+
+    /// Helper function to create a standard comment object for responses
+    fn create_comment_json(id: u64, body: &str) -> serde_json::Value {
+        json!({
+            "id": id,
+            "node_id": "MDExOlB1bGxSZXF1ZXN0Q29tbWVudHt9",
+            "html_url": format!("https://github.com/test-owner/test-repo/pull/123#issuecomment-{}", id),
+            "body": body,
+            "user": standard_user(),
+            "created_at": "2023-01-01T00:00:00Z",
+            "updated_at": "2023-01-01T00:00:00Z",
+            "url": "https://api.github.com/repos/test-owner/test-repo/issues/comments/123",
+            "author_association": "COLLABORATOR"
+        })
+    }
+
+    #[tokio::test]
+    async fn test_post_comment_create_new() {
+        // Create a mock server
+        let server = MockServer::start();
+
+        // Mock the list comments endpoint (used internally by find_existing_comment)
+        let list_comments_mock = server.mock(|when, then| {
+            when.method(GET)
+                .path("/repos/test-owner/test-repo/issues/123/comments")
+                .query_param("per_page", "100");
+
+            then.status(200)
+                .header("content-type", "application/json")
+                .json_body(json!([])); // No existing comments
+        });
+
+        // Mock the create comment endpoint
+        let create_comment_mock = server.mock(|when, then| {
+            when.method(POST)
+                .path("/repos/test-owner/test-repo/issues/123/comments")
+                .json_body(json!({
+                    "body": "Test report\n\n<!-- test-signature -->"
+                }));
+
+            then.status(201)
+                .header("content-type", "application/json")
+                .json_body(create_comment_json(
+                    456,
+                    "Test report\n\n<!-- test-signature -->",
+                ));
+        });
+
+        let octocrab = create_test_octocrab(&server);
+
+        // Call the public function we're testing
+        let result = post_comment(
+            &octocrab,
+            "test-owner",
+            "test-repo",
+            123,
+            "Test report".to_string(),
+            Some("<!-- test-signature -->"),
+        )
+        .await;
+
+        // Verify the result
+        assert!(result.is_ok());
+        list_comments_mock.assert();
+        create_comment_mock.assert();
+    }
+
+    #[tokio::test]
+    async fn test_post_comment_update_existing() {
+        // Create a mock server
+        let server = MockServer::start();
+
+        // Mock the list comments endpoint
+        let list_comments_mock = server.mock(|when, then| {
+            when.method(GET)
+                .path("/repos/test-owner/test-repo/issues/123/comments")
+                .query_param("per_page", "100");
+
+            then.status(200)
+                .header("content-type", "application/json")
+                .json_body(json!([create_comment_json(
+                    456,
+                    "Old report\n\n<!-- test-signature -->"
+                )]));
+        });
+
+        // Mock the update comment endpoint with the exact path and body format
+        let update_comment_mock = server.mock(|when, then| {
+            when.method(POST)
+                .path("/repos/test-owner/test-repo/issues/comments/456")
+                .json_body(json!({
+                    "body": "Updated report\n\n<!-- test-signature -->"
+                }));
+
+            then.status(200)
+                .header("content-type", "application/json")
+                .json_body(create_comment_json(
+                    456,
+                    "Updated report\n\n<!-- test-signature -->",
+                ));
+        });
+
+        let octocrab = create_test_octocrab(&server);
+
+        // Call the public function we're testing
+        let result = post_comment(
+            &octocrab,
+            "test-owner",
+            "test-repo",
+            123,
+            "Updated report".to_string(),
+            Some("<!-- test-signature -->"),
+        )
+        .await;
+
+        // Verify the result
+        assert!(result.is_ok());
+        list_comments_mock.assert();
+        update_comment_mock.assert();
+    }
+
+    #[tokio::test]
+    async fn test_post_comment_with_pagination() {
+        // Create a mock server
+        let server = MockServer::start();
+
+        // Second page mock - ONLY match requests WITH page=2. Needs to be registered first.
+        let second_page_mock = server.mock(|when, then| {
+            when.method(GET)
+                .path("/repos/test-owner/test-repo/issues/123/comments")
+                .query_param("page", "2");
+
+            then.status(200)
+                .header("content-type", "application/json")
+                .header("Link", format!(
+                    "<{}/repos/test-owner/test-repo/issues/123/comments?page=1&per_page=100>; rel=\"prev\", <{}/repos/test-owner/test-repo/issues/123/comments?per_page=100>; rel=\"first\"",
+                    server.base_url(), server.base_url()
+                ))
+                .json_body(json!([
+                create_comment_json(200, "Second page comment\n\n<!-- test-signature -->")
+            ]));
+        });
+
+        // First page mock
+        let first_page_mock = server.mock(|when, then| {
+            when.method(GET)
+                .path("/repos/test-owner/test-repo/issues/123/comments")
+                .query_param("per_page", "100");
+
+            then.status(200)
+                .header("content-type", "application/json")
+                .header("Link", format!(
+                    "<{}/repos/test-owner/test-repo/issues/123/comments?page=2&per_page=100>; rel=\"next\", <{}/repos/test-owner/test-repo/issues/123/comments?page=2&per_page=100>; rel=\"last\"",
+                    server.base_url(), server.base_url()
+                ))
+                .json_body(json!([
+                create_comment_json(100, "First page comment")
+            ]));
+        });
+
+        // Update comment mock
+        let update_comment_mock = server.mock(|when, then| {
+            when.method(POST)
+                .path("/repos/test-owner/test-repo/issues/comments/200")
+                .json_body(json!({
+                    "body": "Test with pagination\n\n<!-- test-signature -->"
+                }));
+
+            then.status(200)
+                .header("content-type", "application/json")
+                .json_body(create_comment_json(
+                    200,
+                    "Test with pagination\n\n<!-- test-signature -->",
+                ));
+        });
+
+        let octocrab = create_test_octocrab(&server);
+
+        let result = post_comment(
+            &octocrab,
+            "test-owner",
+            "test-repo",
+            123,
+            "Test with pagination".to_string(),
+            Some("<!-- test-signature -->"),
+        )
+        .await;
+
+        assert!(result.is_ok());
+        assert!(first_page_mock.hits() > 0, "First page should be requested");
+        assert!(
+            second_page_mock.hits() > 0,
+            "Second page should be requested"
+        );
+        assert!(
+            update_comment_mock.hits() > 0,
+            "Update comment endpoint should be called"
+        );
+    }
+
+    #[tokio::test]
+    async fn test_post_comment_with_error() {
+        let server = MockServer::start();
+
+        // Mock the list comments endpoint with a server error
+        let list_comments_mock = server.mock(|when, then| {
+            when.method(GET)
+                .path("/repos/test-owner/test-repo/issues/123/comments")
+                .query_param("per_page", "100");
+
+            then.status(500)
+                .header("content-type", "application/json")
+                .json_body(json!({
+                    "message": "Internal server error"
+                }));
+        });
+
+        let octocrab = create_test_octocrab(&server);
+
+        let result = post_comment(
+            &octocrab,
+            "test-owner",
+            "test-repo",
+            123,
+            "Test report".to_string(),
+            Some("<!-- test-signature -->"),
+        )
+        .await;
+
+        assert!(result.is_err());
+        assert!(
+            list_comments_mock.hits() >= 1,
+            "Expected the mock to be called at least once"
+        );
+    }
+
+    #[tokio::test]
+    async fn test_post_comment_default_signature() {
+        let server = MockServer::start();
+
+        // Mock the list comments endpoint
+        let list_comments_mock = server.mock(|when, then| {
+            when.method(GET)
+                .path("/repos/test-owner/test-repo/issues/123/comments")
+                .query_param("per_page", "100");
+
+            then.status(200)
+                .header("content-type", "application/json")
+                .json_body(json!([]));
+        });
+
+        // Mock the create comment endpoint - checking for default signature
+        let create_comment_mock = server.mock(|when, then| {
+            when.method(POST)
+                .path("/repos/test-owner/test-repo/issues/123/comments")
+                .json_body(json!({
+                    "body": "Test report\n\n<!-- clippy-annotation-reporter-comment -->"
+                }));
+
+            then.status(201)
+                .header("content-type", "application/json")
+                .json_body(create_comment_json(
+                    456,
+                    "Test report\n\n<!-- clippy-annotation-reporter-comment -->",
+                ));
+        });
+
+        let octocrab = create_test_octocrab(&server);
+
+        let result = post_comment(
+            &octocrab,
+            "test-owner",
+            "test-repo",
+            123,
+            "Test report".to_string(),
+            None,
+        )
+        .await;
+
+        assert!(result.is_ok());
+        list_comments_mock.assert();
+        create_comment_mock.assert();
+    }
+
+    #[tokio::test]
+    async fn test_post_comment_error_on_create() {
+        // Create a mock server
+        let server = MockServer::start();
+
+        // Mock the list comments endpoint (no existing comments)
+        let list_comments_mock = server.mock(|when, then| {
+            when.method(GET)
+                .path("/repos/test-owner/test-repo/issues/123/comments")
+                .query_param("per_page", "100");
+
+            then.status(200)
+                .header("content-type", "application/json")
+                .json_body(json!([]));
+        });
+
+        // Mock the create comment endpoint with an error
+        let create_comment_mock = server.mock(|when, then| {
+            when.method(POST)
+                .path("/repos/test-owner/test-repo/issues/123/comments")
+                .json_body(json!({
+                    "body": "Test report\n\n<!-- test-signature -->"
+                }));
+
+            then.status(422)
+                .header("content-type", "application/json")
+                .json_body(json!({
+                    "message": "Validation failed",
+                    "errors": [
+                        {
+                            "resource": "Issue",
+                            "field": "body",
+                            "code": "invalid"
+                        }
+                    ]
+                }));
+        });
+
+        let octocrab = create_test_octocrab(&server);
+
+        let result = post_comment(
+            &octocrab,
+            "test-owner",
+            "test-repo",
+            123,
+            "Test report".to_string(),
+            Some("<!-- test-signature -->"),
+        )
+        .await;
+
+        assert!(result.is_err());
+        list_comments_mock.assert();
+        create_comment_mock.assert();
+    }
+
+    #[tokio::test]
+    async fn test_post_comment_error_on_update() {
+        let server = MockServer::start();
+
+        // Mock the list comments endpoint
+        let list_comments_mock = server.mock(|when, then| {
+            when.method(GET)
+                .path("/repos/test-owner/test-repo/issues/123/comments")
+                .query_param("per_page", "100");
+
+            then.status(200)
+                .header("content-type", "application/json")
+                .json_body(json!([create_comment_json(
+                    456,
+                    "Old report\n\n<!-- test-signature -->"
+                )]));
+        });
+
+        // Mock the update comment endpoint with an error
+        let update_comment_mock = server.mock(|when, then| {
+            when.method(POST)
+                .path("/repos/test-owner/test-repo/issues/comments/456")
+                .json_body(json!({
+                    "body": "Updated report\n\n<!-- test-signature -->"
+                }));
+
+            then.status(403)
+                .header("content-type", "application/json")
+                .json_body(json!({
+                    "message": "Forbidden",
+                    "documentation_url": "https://docs.github.com/rest/issues/comments"
+                }));
+        });
+
+        let octocrab = create_test_octocrab(&server);
+
+        let result = post_comment(
+            &octocrab,
+            "test-owner",
+            "test-repo",
+            123,
+            "Updated report".to_string(),
+            Some("<!-- test-signature -->"),
+        )
+        .await;
+
+        assert!(result.is_err());
+        list_comments_mock.assert();
+        update_comment_mock.assert();
+    }
+}

From 0a96a8fba87f8ee3bd9ae3d244973d6efa0763ea Mon Sep 17 00:00:00 2001
From: Edmund Kump <edmund.kump@datadoghq.com>
Date: Sat, 31 May 2025 22:45:13 -0400
Subject: [PATCH 5/5] add the reporter module to clippy-annotation-reporter.
 This uses the data from the analyzer and generates the text of the report
 that will be posted on the PR.

---
 .../src/report_generator.rs                   | 593 ++++++++++++++++++
 1 file changed, 593 insertions(+)
 create mode 100644 .github/actions/clippy-annotation-reporter/src/report_generator.rs

diff --git a/.github/actions/clippy-annotation-reporter/src/report_generator.rs b/.github/actions/clippy-annotation-reporter/src/report_generator.rs
new file mode 100644
index 0000000000..305fef3304
--- /dev/null
+++ b/.github/actions/clippy-annotation-reporter/src/report_generator.rs
@@ -0,0 +1,593 @@
+// Copyright 2024-Present Datadog, Inc. https://www.datadoghq.com/
+// SPDX-License-Identifier: Apache-2.0
+
+//! Report generator module for clippy-annotation-reporter
+//!
+//! This module handles the logic for generating formatted reports
+//! based on annotation analysis results.
+
+use crate::analyzer::AnalysisResult;
+use std::collections::{HashMap, HashSet};
+use std::rc::Rc;
+
+/// Generate a detailed report for PR comment
+pub fn generate_report(
+    analysis: &AnalysisResult,
+    rules: &[String],
+    repository: &str,
+    base_branch: &str,
+    head_branch: &str,
+) -> String {
+    let mut report = String::new();
+
+    // Add header and branch information
+    add_header(&mut report, repository, base_branch, head_branch);
+
+    // Add rule summary section
+    add_rule_summary(&mut report, analysis, rules);
+
+    // Add file-level section
+    add_file_level_section(&mut report, analysis);
+
+    // Add crate-level section
+    add_crate_level_section(&mut report, analysis);
+
+    // Add explanation
+    add_explanation(&mut report);
+
+    report
+}
+
+/// Add report header and branch information
+fn add_header(report: &mut String, repository: &str, base_branch: &str, head_branch: &str) {
+    report.push_str("## Clippy Allow Annotation Report\n\n");
+
+    // Add branch information with link to base branch
+    let base_branch_for_url = base_branch.strip_prefix("origin/").unwrap_or(base_branch);
+
+    report.push_str("Comparing clippy allow annotations between branches:\n");
+    report.push_str(&format!(
+        "- **Base Branch**: [{}](https://github.com/{}/tree/{})\n",
+        base_branch, repository, base_branch_for_url
+    ));
+    report.push_str(&format!("- **PR Branch**: {}\n\n", head_branch));
+}
+
+/// Add summary table by rule
+fn add_rule_summary(report: &mut String, analysis: &AnalysisResult, rules: &[String]) {
+    report.push_str("### Summary by Rule\n\n");
+    report.push_str("| Rule | Base Branch | PR Branch | Change |\n");
+    report.push_str("|------|------------|-----------|--------|\n");
+
+    let mut total_base = 0;
+    let mut total_head = 0;
+
+    // Add row for each rule
+    for rule in rules {
+        let base_count = *analysis.base_counts.get(rule).unwrap_or(&0);
+        let head_count = *analysis.head_counts.get(rule).unwrap_or(&0);
+
+        total_base += base_count;
+        total_head += head_count;
+
+        add_table_row(report, rule, base_count, head_count);
+    }
+
+    // Add total row
+    add_table_row(report, "**Total**", total_base, total_head);
+    report.push('\n');
+}
+
+/// Add section showing annotation counts by file
+fn add_file_level_section(report: &mut String, analysis: &AnalysisResult) {
+    if analysis.changed_files.is_empty() {
+        return;
+    }
+
+    report.push_str("### Annotation Counts by File\n\n");
+    report.push_str("| File | Base Branch | PR Branch | Change |\n");
+    report.push_str("|------|------------|-----------|--------|\n");
+
+    // Count annotations by file
+    let base_file_counts = count_annotations_by_file(&analysis.base_annotations);
+    let head_file_counts = count_annotations_by_file(&analysis.head_annotations);
+
+    // Get sorted list of changed files
+    let mut all_files: Vec<String> = analysis.changed_files.iter().cloned().collect();
+    all_files.sort();
+
+    // Add row for each file
+    for file in all_files {
+        let base_count = *base_file_counts.get(&file).unwrap_or(&0);
+        let head_count = *head_file_counts.get(&file).unwrap_or(&0);
+
+        // Skip files with no annotations in either branch
+        if base_count == 0 && head_count == 0 {
+            continue;
+        }
+
+        add_table_row(report, &format!("`{}`", file), base_count, head_count);
+    }
+
+    report.push('\n');
+}
+
+/// Add section showing annotation stats by crate
+fn add_crate_level_section(report: &mut String, analysis: &AnalysisResult) {
+    report.push_str("### Annotation Stats by Crate\n\n");
+    report.push_str("| Crate | Base Branch | PR Branch | Change |\n");
+    report.push_str("|-------|------------|-----------|--------|\n");
+
+    // Get all crates from both base and head
+    let all_crates = get_all_keys(&analysis.base_crate_counts, &analysis.head_crate_counts);
+
+    let mut total_base = 0;
+    let mut total_head = 0;
+
+    // Add row for each crate
+    for crate_name in all_crates {
+        let base_count = *analysis.base_crate_counts.get(&crate_name).unwrap_or(&0);
+        let head_count = *analysis.head_crate_counts.get(&crate_name).unwrap_or(&0);
+
+        // Skip crates with no annotations in either branch
+        if base_count == 0 && head_count == 0 {
+            continue;
+        }
+
+        total_base += base_count;
+        total_head += head_count;
+
+        add_table_row(report, &format!("`{}`", crate_name), base_count, head_count);
+    }
+
+    // Add total row
+    add_table_row(report, "**Total**", total_base, total_head);
+    report.push('\n');
+}
+
+/// Add report explanation footer
+fn add_explanation(report: &mut String) {
+    report.push_str("### About This Report\n\n");
+    report.push_str("This report tracks Clippy allow annotations for specific rules, ");
+    report.push_str("showing how they've changed in this PR. ");
+    report
+        .push_str("Decreasing the number of these annotations generally improves code quality.\n");
+}
+
+/// Add a table row with counts and change
+fn add_table_row(report: &mut String, label: &str, base_count: usize, head_count: usize) {
+    let change = head_count as isize - base_count as isize;
+
+    // Skip rows with no change and no counts
+    if change == 0 && base_count == 0 && head_count == 0 {
+        return;
+    }
+
+    // Calculate percentage change
+    let percent_change = calculate_percent_change(base_count, change);
+
+    // Format the change string with percentage
+    let change_str = format_change_string(change, percent_change);
+
+    report.push_str(&format!(
+        "| {} | {} | {} | {} |\n",
+        label, base_count, head_count, change_str
+    ));
+}
+
+/// Calculate percentage change
+fn calculate_percent_change(base_count: usize, change: isize) -> f64 {
+    if base_count > 0 {
+        (change as f64 / base_count as f64) * 100.0
+    } else if change > 0 {
+        f64::INFINITY
+    } else {
+        0.0
+    }
+}
+
+/// Format change string with appropriate icon and percentage
+fn format_change_string(change: isize, percent_change: f64) -> String {
+    if change > 0 {
+        if percent_change.is_infinite() {
+            format!("⚠️ +{} (N/A)", change)
+        } else {
+            format!("⚠️ +{} (+{:.1}%)", change, percent_change)
+        }
+    } else if change < 0 {
+        format!("✅ {} ({:.1}%)", change, percent_change)
+    } else {
+        "No change (0%)".to_owned()
+    }
+}
+
+/// Count annotations by file
+fn count_annotations_by_file(
+    annotations: &[crate::analyzer::ClippyAnnotation],
+) -> HashMap<Rc<String>, usize> {
+    let mut counts = HashMap::new();
+
+    for anno in annotations {
+        *counts.entry(anno.file.clone()).or_insert(0) += 1;
+    }
+
+    counts
+}
+
+/// Get all unique keys from two HashMaps, sorted
+fn get_all_keys<K: Clone + Ord + std::hash::Hash, V>(
+    map1: &HashMap<K, V>,
+    map2: &HashMap<K, V>,
+) -> Vec<K> {
+    let mut all_keys = HashSet::new();
+
+    for key in map1.keys() {
+        all_keys.insert(key.clone());
+    }
+
+    for key in map2.keys() {
+        all_keys.insert(key.clone());
+    }
+
+    let mut keys_vec: Vec<K> = all_keys.into_iter().collect();
+    keys_vec.sort();
+
+    keys_vec
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+    use crate::analyzer::ClippyAnnotation;
+    use std::collections::{HashMap, HashSet};
+    use std::rc::Rc;
+
+    // Helper function to create a test AnalysisResult
+    fn create_analysis_result() -> crate::analyzer::AnalysisResult {
+        let mut base_counts = HashMap::new();
+        let rule1 = Rc::new("clippy::unwrap_used".to_owned());
+        let rule2 = Rc::new("clippy::match_bool".to_owned());
+        let rule3 = Rc::new("clippy::unused_imports".to_owned());
+
+        base_counts.insert(rule1.clone(), 5);
+        base_counts.insert(rule2.clone(), 3);
+        base_counts.insert(rule3.clone(), 10);
+
+        let mut head_counts = HashMap::new();
+        head_counts.insert(rule1.clone(), 3);
+        head_counts.insert(rule2.clone(), 4);
+        head_counts.insert(rule3.clone(), 5);
+
+        let mut base_crate_counts = HashMap::new();
+        let crate1 = Rc::new("crate1".to_owned());
+        let crate2 = Rc::new("crate2".to_owned());
+
+        base_crate_counts.insert(crate1.clone(), 8);
+        base_crate_counts.insert(crate2.clone(), 10);
+
+        let mut head_crate_counts = HashMap::new();
+        head_crate_counts.insert(crate1.clone(), 5);
+        head_crate_counts.insert(crate2.clone(), 12);
+
+        let mut changed_files = HashSet::new();
+        changed_files.insert("src/file1.rs".to_owned());
+        changed_files.insert("src/file2.rs".to_owned());
+
+        let file1 = Rc::new("src/file1.rs".to_owned());
+        let file2 = Rc::new("src/file2.rs".to_owned());
+
+        let base_annotations = vec![
+            ClippyAnnotation {
+                file: file1.clone(),
+                rule: rule1.clone(),
+            },
+            ClippyAnnotation {
+                file: file1.clone(),
+                rule: rule1.clone(),
+            },
+            ClippyAnnotation {
+                file: file1.clone(),
+                rule: rule2.clone(),
+            },
+            ClippyAnnotation {
+                file: file2.clone(),
+                rule: rule1.clone(),
+            },
+            ClippyAnnotation {
+                file: file2.clone(),
+                rule: rule3.clone(),
+            },
+        ];
+
+        let head_annotations = vec![
+            ClippyAnnotation {
+                file: file1.clone(),
+                rule: rule1.clone(),
+            },
+            ClippyAnnotation {
+                file: file1.clone(),
+                rule: rule2.clone(),
+            },
+            ClippyAnnotation {
+                file: file1.clone(),
+                rule: rule2.clone(),
+            },
+            ClippyAnnotation {
+                file: file2.clone(),
+                rule: rule3.clone(),
+            },
+        ];
+
+        crate::analyzer::AnalysisResult {
+            base_annotations,
+            head_annotations,
+            base_counts,
+            head_counts,
+            changed_files,
+            base_crate_counts,
+            head_crate_counts,
+        }
+    }
+
+    #[test]
+    fn test_generate_report_basic() {
+        let analysis = create_analysis_result();
+        let rules = vec![
+            "clippy::unwrap_used".to_owned(),
+            "clippy::match_bool".to_owned(),
+            "clippy::unused_imports".to_owned(),
+        ];
+
+        let report = generate_report(
+            &analysis,
+            &rules,
+            "test-owner/test-repo",
+            "main",
+            "feature-branch",
+        );
+
+        // Verify the report contains expected sections
+        assert!(report.contains("## Clippy Allow Annotation Report"));
+        assert!(report.contains("### Summary by Rule"));
+        assert!(report.contains("### Annotation Counts by File"));
+        assert!(report.contains("### Annotation Stats by Crate"));
+        assert!(report.contains("### About This Report"));
+
+        // Verify the report contains repository and branch information
+        assert!(report.contains("test-owner/test-repo"));
+        assert!(report.contains("main"));
+        assert!(report.contains("feature-branch"));
+    }
+
+    #[test]
+    fn test_generate_report_rule_summary() {
+        let analysis = create_analysis_result();
+        let rules = vec![
+            "clippy::unwrap_used".to_owned(),
+            "clippy::match_bool".to_owned(),
+            "clippy::unused_imports".to_owned(),
+        ];
+
+        let report = generate_report(
+            &analysis,
+            &rules,
+            "test-owner/test-repo",
+            "main",
+            "feature-branch",
+        );
+
+        // Verify rule summary contains all rules
+        assert!(report.contains("clippy::unwrap_used"));
+        assert!(report.contains("clippy::match_bool"));
+        assert!(report.contains("clippy::unused_imports"));
+
+        // Verify counts and changes
+        assert!(report.contains("5")); // Base count for unwrap_used
+        assert!(report.contains("3")); // Head count for unwrap_used
+        assert!(report.contains("-2")); // Change for unwrap_used
+
+        assert!(report.contains("3")); // Base count for match_bool
+        assert!(report.contains("4")); // Head count for match_bool
+        assert!(report.contains("+1")); // Change for match_bool
+
+        assert!(report.contains("10")); // Base count for unused_imports
+        assert!(report.contains("5")); // Head count for unused_imports
+        assert!(report.contains("-5")); // Change for unused_imports
+    }
+
+    #[test]
+    fn test_generate_report_file_section() {
+        let analysis = create_analysis_result();
+        let rules = vec![
+            "clippy::unwrap_used".to_owned(),
+            "clippy::match_bool".to_owned(),
+            "clippy::unused_imports".to_owned(),
+        ];
+
+        let report = generate_report(
+            &analysis,
+            &rules,
+            "test-owner/test-repo",
+            "main",
+            "feature-branch",
+        );
+
+        // Verify file section contains the changed files
+        assert!(report.contains("src/file1.rs"));
+        assert!(report.contains("src/file2.rs"));
+
+        // Verify file counts for file1.rs
+        // In the base branch, file1.rs has 3 annotations (2 unwrap_used, 1 match_bool)
+        // In the head branch, file1.rs has 3 annotations (1 unwrap_used, 2 match_bool)
+        let file1_pattern = r"`src/file1\.rs`\s*\|\s*3\s*\|\s*3\s*\|\s*No change";
+        assert!(
+            report.contains("| `src/file1.rs` | 3 | 3 |")
+                || regex::Regex::new(file1_pattern).unwrap().is_match(&report),
+            "File1 count information not found in report"
+        );
+
+        // Verify file counts for file2.rs
+        // In the base branch, file2.rs has 2 annotations (1 unwrap_used, 1 unused_imports)
+        // In the head branch, file2.rs has 1 annotation (1 unused_imports)
+        let file2_pattern = r"`src/file2\.rs`\s*\|\s*2\s*\|\s*1\s*\|\s*.*-1";
+        assert!(
+            report.contains("| `src/file2.rs` | 2 | 1 |")
+                || regex::Regex::new(file2_pattern).unwrap().is_match(&report),
+            "File2 count information not found in report"
+        );
+
+        // Make sure the change column has the correct indicators
+        assert!(
+            report.contains("No change") || report.contains("(0%)"),
+            "No change indicator missing for file1"
+        );
+        assert!(
+            report.contains("✅ -1"),
+            "Decrease indicator missing for file2"
+        );
+    }
+
+    #[test]
+    fn test_generate_report_crate_section() {
+        let analysis = create_analysis_result();
+        let rules = vec![
+            "clippy::unwrap_used".to_owned(),
+            "clippy::match_bool".to_owned(),
+            "clippy::unused_imports".to_owned(),
+        ];
+
+        let report = generate_report(
+            &analysis,
+            &rules,
+            "test-owner/test-repo",
+            "main",
+            "feature-branch",
+        );
+
+        // Verify crate section contains the crates
+        assert!(report.contains("`crate1`"));
+        assert!(report.contains("`crate2`"));
+
+        // Verify crate counts
+        // Base count for crate1: 8, Head count: 5
+        assert!(report.contains("8"));
+        assert!(report.contains("5"));
+        assert!(report.contains("-3")); // Change
+
+        // Base count for crate2: 10, Head count: 12
+        assert!(report.contains("10"));
+        assert!(report.contains("12"));
+        assert!(report.contains("+2")); // Change
+    }
+
+    #[test]
+    fn test_generate_report_empty_changed_files() {
+        let mut analysis = create_analysis_result();
+        analysis.changed_files.clear();
+
+        let rules = vec![
+            "clippy::unwrap_used".to_owned(),
+            "clippy::match_bool".to_owned(),
+            "clippy::unused_imports".to_owned(),
+        ];
+
+        let report = generate_report(
+            &analysis,
+            &rules,
+            "test-owner/test-repo",
+            "main",
+            "feature-branch",
+        );
+
+        // Verify that the file-level section is not included when there are no changed files
+        assert!(!report.contains("### Annotation Counts by File"));
+
+        // But other sections should still be present
+        assert!(report.contains("### Summary by Rule"));
+        assert!(report.contains("### Annotation Stats by Crate"));
+    }
+
+    #[test]
+    fn test_generate_report_formatting() {
+        let analysis = create_analysis_result();
+        let rules = vec![
+            "clippy::unwrap_used".to_owned(),
+            "clippy::match_bool".to_owned(),
+            "clippy::unused_imports".to_owned(),
+        ];
+
+        let report = generate_report(
+            &analysis,
+            &rules,
+            "test-owner/test-repo",
+            "main",
+            "feature-branch",
+        );
+
+        // Verify positive changes are formatted with ⚠️
+        assert!(report.contains("⚠️ +1"));
+
+        // Verify negative changes are formatted with ✅
+        assert!(report.contains("✅ -2"));
+
+        // Verify total row exists
+        assert!(report.contains("**Total**"));
+    }
+
+    #[test]
+    fn test_generate_report_with_origin_prefix() {
+        let analysis = create_analysis_result();
+        let rules = vec![
+            "clippy::unwrap_used".to_owned(),
+            "clippy::match_bool".to_owned(),
+            "clippy::unused_imports".to_owned(),
+        ];
+
+        // Test with origin/ prefix in base branch
+        let report = generate_report(
+            &analysis,
+            &rules,
+            "test-owner/test-repo",
+            "origin/main",
+            "feature-branch",
+        );
+
+        // Verify the origin/ prefix is removed in the link URL
+        assert!(report.contains("https://github.com/test-owner/test-repo/tree/main"));
+        assert!(report.contains("origin/main"));
+    }
+
+    #[test]
+    fn test_generate_report_new_annotations() {
+        // Create an analysis where annotations are added in the head branch
+        let mut analysis = create_analysis_result();
+
+        // Add a new rule that only appears in the head counts
+        let new_rule = Rc::new("clippy::new_rule".to_owned());
+        analysis.head_counts.insert(new_rule.clone(), 2);
+
+        let rules = vec![
+            "clippy::unwrap_used".to_owned(),
+            "clippy::match_bool".to_owned(),
+            "clippy::unused_imports".to_owned(),
+            "clippy::new_rule".to_owned(),
+        ];
+
+        let report = generate_report(
+            &analysis,
+            &rules,
+            "test-owner/test-repo",
+            "main",
+            "feature-branch",
+        );
+
+        // Verify that new rule appears with appropriate formatting
+        assert!(report.contains("clippy::new_rule"));
+        assert!(report.contains("0")); // Base count should be 0
+        assert!(report.contains("2")); // Head count should be 2
+        assert!(report.contains("⚠️ +2")); // Change should be +2
+
+        // Also verify N/A for the percentage since base count is 0
+        assert!(report.contains("N/A"));
+    }
+}