Bump deps to current, stack to 3.2.0

Author: rogerdahl

README.md

@@ -303,7 +303,9 @@ Update the `requirements.txt` file:
 
     $  pip freeze > requirements.txt
 
-The DataONE Python stack specifies fixed versions of all its dependencies. This ensures that a stack deployed to production matches one that passed the tests. As updating the versions in the `setup.py` files manually is time consuming and error prone, a script is included that automates the task. The script updates the version information for the dependencies in the `setup.py` files to match the versions of the currently installed dependencies. Run the script with:
+The DataONE Python stack specifies the versions that were tested in CI builds before release as the lowest required versions, and allows any later versions to be installed as part of regular maintenance.
+
+As updating the versions in the `setup.py` files manually is time consuming and error prone, a script is included that automates the task. The script updates the version information for the dependencies in the `setup.py` files to match the versions of the currently installed dependencies. Run the script with:
 
     $ cd d1_python
     $ src-sync-dependencies.py . <version>

client_cli/src/setup.py

@@ -28,7 +28,7 @@
 def main():
   setuptools.setup(
     name='dataone.cli',
-    version='3.0.4',
+    version='3.2.0',
     description='Command-Line Interface (CLI) for DataONE',
     author='DataONE Project',
     author_email='[email protected]',
@@ -37,10 +37,10 @@ def main():
     packages=setuptools.find_packages(),
     include_package_data=True,
     install_requires=[
-      'dataone.common >= 3.0.4',
-      'dataone.libclient >= 3.0.4',
+      'dataone.common >= 3.2.0',
+      'dataone.libclient >= 3.2.0',
       #
-      'requests >= 2.18.4',
+      'requests >= 2.19.1',
     ],
     entry_points={'console_scripts': [
       'dataone = d1_cli.dataone:main',

client_onedrive/src/setup.py

@@ -31,7 +31,7 @@
 def main():
   setuptools.setup(
     name='dataone.onedrive',
-    version='3.0.4',
+    version='3.2.0',
     description='Filesystem access to the DataONE Workspace',
     author='DataONE Project',
     author_email='[email protected]',
@@ -40,14 +40,14 @@ def main():
     packages=setuptools.find_packages(),
     include_package_data=True,
     install_requires=[
-      'dataone.common >= 3.0.4',
-      'dataone.libclient >= 3.0.4',
+      'dataone.common >= 3.2.0',
+      'dataone.libclient >= 3.2.0',
       #
-      'fusepy >= 2.0.4',
+      'fusepy >= 3.0.1',
       'pyxb >= 1.2.6',
-      'pyzotero >= 1.3.2',
+      'pyzotero >= 1.3.6',
       'rdflib >= 4.2.2',
-      'requests >= 2.18.4',
+      'requests >= 2.19.1',
     ],
     setup_requires=[
       'setuptools_git >= 1.1',

dev_tools/src/setup.py

@@ -28,7 +28,7 @@
 def main():
   setuptools.setup(
     name='dataone.dev',
-    version='3.0.4',
+    version='3.2.0',
     description='DataONE developer tools',
     author='DataONE Project',
     author_email='[email protected]',
@@ -51,9 +51,9 @@ def main():
       # Python doesn't have a real package manager.
       'idna == 2.6',
       #
-      'baron >= 0.6.6',
-      'pip >= 10.0.1',
-      'redbaron >= 0.6.3',
+      'baron >= 0.7',
+      'pip >= 18.1',
+      'redbaron >= 0.7.1',
     ],
     setup_requires=[
       'setuptools_git >= 1.1',

gmn/src/d1_gmn/version.py

@@ -16,4 +16,4 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 
-__version__ = '3.0.4'
+__version__ = '3.2.0'

gmn/src/setup.py

@@ -30,7 +30,7 @@ def main():
   # noinspection PyUnresolvedReferences
   setuptools.setup(
     name='dataone.gmn',
-    version='3.0.4',
+    version='3.2.0',
     description='DataONE Generic Member Node (GMN)',
     author='DataONE Project',
     author_email='[email protected]',
@@ -42,17 +42,17 @@ def main():
       '': ['settings.py'],
     },
     install_requires=[
-      'dataone.cli >= 3.0.4',
-      'dataone.common >= 3.0.4',
-      'dataone.libclient >= 3.0.4',
-      'dataone.scimeta >= 3.0.4',
+      'dataone.cli >= 3.2.0',
+      'dataone.common >= 3.2.0',
+      'dataone.libclient >= 3.2.0',
+      'dataone.scimeta >= 3.2.0',
       #
-      'django >= 2.0.6',
+      'django >= 2.1.2',
       'iso8601 >= 0.1.12',
-      'psycopg2 >= 2.7.4',
+      'psycopg2 >= 2.7.5',
       'PyJWT >= 1.6.4',
       'pyxb >= 1.2.6',
-      'requests >= 2.18.4',
+      'requests >= 2.19.1',
     ],
     setup_requires=[
       'setuptools_git >= 1.1',

lib_client/src/setup.py

@@ -28,7 +28,7 @@
 def main():
   setuptools.setup(
     name='dataone.libclient',
-    version='3.0.4',
+    version='3.2.0',
     description='A DataONE client library for Python',
     author='DataONE Project',
     author_email='[email protected]',
@@ -37,11 +37,11 @@ def main():
     packages=setuptools.find_packages(),
     include_package_data=True,
     install_requires=[
-      'dataone.common >= 3.0.4',
+      'dataone.common >= 3.2.0',
       #
       'pyxb >= 1.2.6',
       'requests-toolbelt >= 0.8.0',
-      'requests[security] >= 2.18.4',
+      'requests[security] >= 2.19.1',
     ],
     setup_requires=[
       'setuptools_git >= 1.1',

lib_common/src/d1_common/const.py

@@ -37,7 +37,7 @@
 )
 
 # Version of the DataONE Python stack
-VERSION = '3.0.4'
+VERSION = '3.2.0'
 
 # Default number of items in a single page of a multi-page result set
 DEFAULT_SLICE_SIZE = 100

lib_common/src/d1_common/xml.py

@@ -203,7 +203,7 @@ def etree_from_xml(xml_str, encoding='utf-8'):
 
 
 def _compare_attr(a_tree, b_tree):
-  for a_el in a_tree.getiterator():
+  for a_el in a_tree.iter():
     b_el = _find_corresponding_element(a_el, a_tree, b_tree)
     for attr_name, attr_val in list(a_el.items()):
       _validate_element_attr(b_tree, b_el, attr_name, attr_val)

lib_common/src/setup.py

@@ -28,7 +28,7 @@
 def main():
   setuptools.setup(
     name='dataone.common',
-    version='3.0.4',
+    version='3.2.0',
     description=(
       'Contains functionality common to projects that interact with '
       'the DataONE infrastructure via Python'
@@ -41,10 +41,10 @@ def main():
     include_package_data=True,
     install_requires=[
       'contextlib2 >= 0.5.5',
-      'cryptography >= 2.2.2',
+      'cryptography >= 2.3.1',
       'iso8601 >= 0.1.12',
       'PyJWT >= 1.6.4',
-      'pyasn1 >= 0.4.3',
+      'pyasn1 >= 0.4.4',
       'pyxb >= 1.2.6',
       'rdflib >= 4.2.2',
       'zipstream >= 1.1.4',