Coereba/NAMESPACE at main · DavidRach/Coereba · GitHub

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# Generated by roxygen2: do not edit by hand

export(Coereba_App)
export(Coereba_Concatenate)
export(Coereba_FCSExport)
export(Coereba_FCS_Reversal)
export(Coereba_GateCutoffs)
export(Coereba_MarkerExpressions)
export(Coereba_Processing)
export(Coereba_UpdateGates)
export(Utility_Behemoth)
export(Utility_Coereba)
export(Utility_Heatmap)
export(Utility_LongitudinalBehemoth)
export(Utility_MarkerPlots)
export(Utility_Stats)
importClassesFrom(fBasics,fHTEST)
importFrom(Biobase,pData)
importFrom(BiocGenerics,nrow)
importFrom(DT,DTOutput)
importFrom(DT,datatable)
importFrom(DT,renderDT)
importFrom(Luciernaga,NameCleanUp)
importFrom(RColorBrewer,brewer.pal)
importFrom(S4Vectors,metadata)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(broom,tidy)
importFrom(data.table,fread)
importFrom(dplyr,across)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,c_across)
importFrom(dplyr,case_when)
importFrom(dplyr,desc)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,lag)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,mutate_all)
importFrom(dplyr,n)
importFrom(dplyr,n_distinct)
importFrom(dplyr,pull)
importFrom(dplyr,relocate)
importFrom(dplyr,rename)
importFrom(dplyr,row_number)
importFrom(dplyr,rowwise)
importFrom(dplyr,select)
importFrom(dplyr,semi_join)
importFrom(dplyr,slice)
importFrom(dplyr,slice_sample)
importFrom(dplyr,summarise)
importFrom(dplyr,summarize)
importFrom(dplyr,ungroup)
importFrom(flowCore,"parameters<-")
importFrom(flowCore,exprs)
importFrom(flowCore,keyword)
importFrom(flowCore,parameters)
importFrom(flowCore,write.FCS)
importFrom(flowWorkspace,gs_get_pop_paths)
importFrom(flowWorkspace,gs_pop_get_data)
importFrom(flowWorkspace,gs_pop_get_gate)
importFrom(flowWorkspace,gs_pop_remove)
importFrom(flowWorkspace,keyword)
importFrom(flowWorkspace,load_cytoframe_from_fcs)
importFrom(ggbeeswarm,geom_beeswarm)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,labs)
importFrom(ggplot2,lims)
importFrom(ggplot2,position_dodge)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_shape_manual)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,stat_summary)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(gt,cell_fill)
importFrom(gt,cell_text)
importFrom(gt,cells_body)
importFrom(gt,cols_align)
importFrom(gt,cols_width)
importFrom(gt,gt)
importFrom(gt,opt_table_font)
importFrom(gt,sub_values)
importFrom(gt,tab_style)
importFrom(htmltools,div)
importFrom(htmlwidgets,onRender)
importFrom(lubridate,ymd_hms)
importFrom(magrittr,"%>%")
importFrom(methods,new)
importFrom(openCyto,gs_add_gating_method)
importFrom(plotly,ggplotly)
importFrom(plotly,plotlyOutput)
importFrom(plotly,renderPlotly)
importFrom(plotly,style)
importFrom(purrr,flatten)
importFrom(purrr,map)
importFrom(purrr,walk)
importFrom(rlang,sym)
importFrom(scales,percent)
importFrom(shiny,actionButton)
importFrom(shiny,checkboxInput)
importFrom(shiny,column)
importFrom(shiny,fileInput)
importFrom(shiny,fluidRow)
importFrom(shiny,icon)
importFrom(shiny,isolate)
importFrom(shiny,mainPanel)
importFrom(shiny,modalDialog)
importFrom(shiny,numericInput)
importFrom(shiny,observe)
importFrom(shiny,observeEvent)
importFrom(shiny,reactive)
importFrom(shiny,reactiveValues)
importFrom(shiny,removeModal)
importFrom(shiny,renderTable)
importFrom(shiny,renderUI)
importFrom(shiny,req)
importFrom(shiny,runApp)
importFrom(shiny,selectInput)
importFrom(shiny,showModal)
importFrom(shiny,sidebarLayout)
importFrom(shiny,sidebarPanel)
importFrom(shiny,tableOutput)
importFrom(shiny,tagList)
importFrom(shiny,tags)
importFrom(shiny,textInput)
importFrom(shiny,uiOutput)
importFrom(shiny,updateSelectInput)
importFrom(shinydashboard,dashboardBody)
importFrom(shinydashboard,dashboardHeader)
importFrom(shinydashboard,dashboardPage)
importFrom(shinydashboard,dashboardSidebar)
importFrom(shinydashboard,menuItem)
importFrom(shinydashboard,sidebarMenu)
importFrom(shinydashboard,tabItem)
importFrom(shinydashboard,tabItems)
importFrom(shinyjs,useShinyjs)
importFrom(stats,aov)
importFrom(stats,kruskal.test)
importFrom(stats,loess)
importFrom(stats,pairwise.t.test)
importFrom(stats,pairwise.wilcox.test)
importFrom(stats,pchisq)
importFrom(stats,pnorm)
importFrom(stats,setNames)
importFrom(stats,shapiro.test)
importFrom(stats,t.test)
importFrom(stats,wilcox.test)
importFrom(stringr,str_detect)
importFrom(stringr,str_pad)
importFrom(stringr,str_wrap)
importFrom(tibble,as_tibble)
importFrom(tibble,rownames_to_column)
importFrom(tibble,tibble)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,pivot_wider)
importFrom(tidyr,separate_wider_delim)
importFrom(tidyr,unnest)
importFrom(tidyselect,all_of)
importFrom(tidyselect,any_of)
importFrom(tidyselect,everything)
importFrom(tidyselect,starts_with)
importFrom(tidyselect,where)
importFrom(utils,read.csv)
importFrom(utils,write.csv)
importFrom(viridis,scale_fill_viridis)
importFrom(zoo,rollapply)
importFrom(zoo,zoo)