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Fix bioc check.
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.github/workflows/check-bioc.yml

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@@ -197,6 +197,14 @@ jobs:
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continue-on-error: true
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shell: Rscript {0}
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- name: install SeuratObject 4.1.4 to avoid v5 problems
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run: |
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## Install SeuratObject < v5
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remove.packages("SeuratObject")
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install.packages("remotes")
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remotes::install_version(package = "SeuratObject", version = "4.1.4", force = TRUE)
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shell: Rscript {0}
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- name: Install dependencies pass 2
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run: |
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## Pass #2 at installing dependencies
@@ -206,14 +214,6 @@ jobs:
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remotes::install_local(dependencies = TRUE, repos = BiocManager::repositories(), build_vignettes = TRUE, upgrade = TRUE, force = TRUE)
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shell: Rscript {0}
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- name: install SeuratObject 4.1.4 to avoid v5 problems
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run: |
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## Install SeuratObject < v5
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remove.packages("SeuratObject")
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install.packages("remotes")
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remotes::install_version(package = "SeuratObject", version = "4.1.4", force = TRUE)
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shell: Rscript {0}
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- name: Install BiocGenerics
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if: env.has_RUnit == 'true'
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run: |

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