Commit 983cdcd
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fix: reduce sentmm2 sort_thread_mem and mbuffer to fit Slurm mem
sort_thread_mem 4G * 32 threads = 128GB + mbuffer 128GB = 256GB,
exceeding the 200GB Slurm mem_mb allocation. minimap2 streams
slower than Sentieon BWA, so mbuffer fills up and OOMs the job,
causing 'samtools sort: truncated file'.
Changed:
- sort_thread_mem: 4G -> 3G (32 * 3G = 96GB ceiling)
- mbuffer: 128G -> 32G (plenty for I/O smoothing)
- Total realistic peak: ~140-150GB, fits in 200GB allocation1 parent 208506f commit 983cdcd
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