Installation Problem

[dedop-cotton]

Attempted installation of DeDop, following instructions at
http://dedop-core.readthedocs.io/en/latest/user_manual/um_setup.html

Trying on MacOSX 10.13, using Miniconda

1. The Miniconda download is a passive shell script. Needs an instruction to run the command “bash Miniconda3….” in terminal window (Download directory).
2. Default installation directory is under user’s home directory, changed to /Applications/miniconda3.
3. The conda installation was python 3.6, so first thing it did was revert to python 3.5
4. “git” command requires Xcode to be installed first, this is prompted for.
5. Dedop-core directory goes into top level of home directory, I moved it down a level.
6. Error after “dedop --help”:

7. Unable to proceed further
   

(dedop) Elliss-MacBook-Pro:dedop-core ellis$ dedop --help
Traceback (most recent call last):
File "/Applications/miniconda3/envs/dedop/bin/dedop", line 11, in
load_entry_point('dedop', 'console_scripts', 'dedop')()
File "/Applications/miniconda3/envs/dedop/lib/python3.5/site-packages/pkg_resources/init.py", line 572, in load_entry_point
return get_distribution(dist).load_entry_point(group, name)
File "/Applications/miniconda3/envs/dedop/lib/python3.5/site-packages/pkg_resources/init.py", line 2755, in load_entry_point
return ep.load()
File "/Applications/miniconda3/envs/dedop/lib/python3.5/site-packages/pkg_resources/init.py", line 2408, in load
return self.resolve()
File "/Applications/miniconda3/envs/dedop/lib/python3.5/site-packages/pkg_resources/init.py", line 2414, in resolve
module = import(self.module_name, fromlist=['name'], level=0)
File "/Users/ellis/Processes/dedop-core/dedop/cli/main.py", line 23, in
from cate.util.cli import run_main, Command, SubCommandCommand, CommandError
ImportError: No module named 'cate'

[hans-permana]

This is because the documentation was out of date. In commits fcdbd5e and 59e9fe3 the documentation has been updated to include cate-cli in the package dependency. Could you try the installation again with the updated instruction?

[dedop-cotton]

OK, Thanks Hans, We’ll try again> Regards David Dr P.D. Cotton Satellite Oceanographic Consultants (SatOC) www.satoc.eu Direct: +44 (0)161 439 0833 Mobile: +44 (0)791 996 6335

…

On 29 Jan 2018, at 14:35, Hans Permana ***@***.***> wrote: This is because the documentation was out of date. In commits fcdbd5e <fcdbd5e> and 59e9fe3 <59e9fe3> the documentation has been updated to include cate-cli in the package dependency. Could you try the installation again with the updated instruction? — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#45 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AenaHobfqd9J_6spz4SiGXnDNml54noMks5tPdcagaJpZM4Runx2>.

[dedop-cotton]

Hi Hans, Tried it using the instructions at http://dedop-core.readthedocs.io/en/latest/user_manual/um_setup.html, but I still get the same error (see below) . I can see cate-util but not cate.cli in the libraries installed. Will put this on github too. Regards David Dr P.D. Cotton Satellite Oceanographic Consultants (SatOC) www.satoc.eu Direct: +44 (0)161 439 0833 Mobile: +44 (0)791 996 6335

On 29 Jan 2018, at 14:35, Hans Permana ***@***.***> wrote: This is because the documentation was out of date. In commits fcdbd5e <fcdbd5e> and 59e9fe3 <59e9fe3> the documentation has been updated to include cate-cli in the package dependency. Could you try the installation again with the updated instruction? — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#45 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AenaHobfqd9J_6spz4SiGXnDNml54noMks5tPdcagaJpZM4Runx2>.

Traceback (most recent call last): File "/Users/davidcotton/miniconda3/envs/dedop/bin/dedop", line 11, in <module> load_entry_point('dedop', 'console_scripts', 'dedop')() File "/Users/davidcotton/miniconda3/envs/dedop/lib/python3.5/site-packages/pkg_resources/__init__.py", line 572, in load_entry_point return get_distribution(dist).load_entry_point(group, name) File "/Users/davidcotton/miniconda3/envs/dedop/lib/python3.5/site-packages/pkg_resources/__init__.py", line 2755, in load_entry_point return ep.load() File "/Users/davidcotton/miniconda3/envs/dedop/lib/python3.5/site-packages/pkg_resources/__init__.py", line 2408, in load return self.resolve() File "/Users/davidcotton/miniconda3/envs/dedop/lib/python3.5/site-packages/pkg_resources/__init__.py", line 2414, in resolve module = __import__(self.module_name, fromlist=['__name__'], level=0) File "/Users/davidcotton/dedop-core/dedop/cli/main.py", line 23, in <module> from cate.util.cli import run_main, Command, SubCommandCommand, CommandError ImportError: No module named 'cate'

[hans-permana]

hi David,

I can reproduce your issue in MacOS 10.13.3. My investigation suggests that with the given command, Miniconda somehow fetches the wrong version of cate-util (i.e. one for Python 3.6). This results in the fetched cate-util package not available for the current environment, which is on Python 3.5.

Long term solution is to migrate the entire dedop to Python 3.6 (#33), but in the meantime I updated the doc (again!) to ensure that a specific cate-util version is installed.

[dedop-cotton]

HI Hans, Thanks managed to get a bit further today, but then it all fell over when I tried to launch the studio (See the attached doc for my experience). I am not at all familiar with code installations, so I suspect some things are not in the expected place in my directory structure (everything is currently installed under the point where my mac terminal window opens (/Users/davidcotton/….) So, if you want the installation guidance to be properly fool proof (with me as the fool), then I need precise guidance on where things should be installed, and where I need to located myself before following the instructions. At present the instructions expect a higher level of knowledge than I possess. Regards David Dr P.D. Cotton Satellite Oceanographic Consultants (SatOC) www.satoc.eu Direct: +44 (0)161 439 0833 Mobile: +44 (0)791 996 6335

…

On 31 Jan 2018, at 09:02, Hans Permana ***@***.***> wrote: hi David, I can reproduce your issue in MacOS 10.13.3. My investigation suggests that with the given command, Miniconda somehow fetches the wrong version of cate-util (i.e. one for Python 3.6). This results in the fetched cate-util package not available for the current environment, which is on Python 3.5. Long term solution is to migrate the entire dedop to Python 3.6 (#33 <#33>), but in the meantime I updated the doc (again!) to ensure that a specific cate-util version is installed. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#45 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AenaHi7FyIVIbATE_rODxZw1fnqj5ia2ks5tQCwcgaJpZM4Runx2>.

[hans-permana]

Hi David,

Could you please attach the screenshot showing the error here? I could not find one from your last reply. Also, did you encounter this issue when trying to install DeDop Studio (from source, I assume) or when launching DeDop Studio after a successful install?

Thanks,
Hans

[dedop-cotton]

HI Hans, The error message was in terminal window. I didn’t take a screenshot, but the contents are pasted below and in the attached document. Yes - The error was in trying to install dedop studio from source, after dedop-core had successfully been installed. I suspect the problem could be that dedop core installation was not in the directory expected by dedop studio? Regards David

On 5 Feb 2018, at 16:06, Hans Permana ***@***.***> wrote: Hi David, Could you please attach the screenshot showing the error here? I could not find one from your last reply. Also, did you encounter this issue when trying to install DeDop Studio (from source, I assume) or when launching DeDop Studio after a successful install? Thanks, Hans — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#45 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AenaHpbrXKkUq8Gd9yurwV0ru2rnNI95ks5tRycjgaJpZM4Runx2>. ***@***.*** start /Users/davidcotton/dedop-core/dedop-studio electron app

dedop-studio App configuration successfully loaded from "/Users/davidcotton/dedop-core/dedop-studio/dedop-config.js" dedop-studio User preferences successfully loaded from "/Users/davidcotton/.dedop/dedop-prefs.json" dedop-studio appConfig: { webAPIConfig: { command: '/Users/davidcotton/miniconda3/envs/dedop/bin/dedop-webapi', servicePort: 9090, serviceAddress: '', serviceFile: 'dedop-webapi-info.json', processOptions: {}, useMockService: false }, prefsFile: null, devToolsOpened: true, devToolsExtensions: [] } dedop-studio userPrefs: { mainWindowBounds: { x: 396, y: 140, width: 1366, height: 768 }, devToolsOpened: false, isChdEditable: false, isCnfEditable: true, isCstEditable: false, isOfflineMode: false, processes: [] } dedop-studio Ready. dedop-studio Waiting for response from http://127.0.0.1:9090/ dedop-studio Waiting for DeDop backend service... dedop-studio Waiting for DeDop WebAPI service to respond after 0 ms dedop-studio Starting DeDop WebAPI service using arguments: --caller,dedop-studio,--port,9090,--address,,--file,dedop-webapi-info.json,start dedop-studio Waiting for response from http://127.0.0.1:9090/ dedop-studio Waiting for DeDop backend service... dedop-studio Waiting for DeDop WebAPI service to respond after 0 ms dedop-studio Waiting for response from http://127.0.0.1:9090/ dedop-studio Waiting for DeDop backend service... dedop-studio Waiting for DeDop WebAPI service to respond after 0 ms dedop-studio error: [Errno 2] No such file or directory: '/Users/davidcotton/.dedop/1.3.0/webapi.log' dedop-studio DeDop WebAPI service process exited with code 1. dedop-studio Quit. dedop-studio Stopping DeDop WebAPI service using arguments: --caller,dedop-studio,--port,9090,--address,,--file,dedop-webapi-info.json,stop dedop-studio Waiting for response from http://127.0.0.1:9090/ dedop-studio Waiting for DeDop backend service... dedop-studio showSplashMessage: splash not visible Waiting for DeDop backend service... dedop-studio Waiting for DeDop WebAPI service to respond after 0 ms npm ERR! code ELIFECYCLE npm ERR! errno 6 npm ERR! DeDop-studio@1.3.0 start: `electron app` npm ERR! Exit status 6 npm ERR! npm ERR! Failed at the DeDop-studio@1.3.0 start script. npm ERR! This is probably not a problem with npm. There is likely additional logging output above. npm ERR! A complete log of this run can be found in: npm ERR! /Users/davidcotton/.npm/_logs/2018-02-02T17_42_28_510Z-debug.log

[hans-permana]

Hi David,
This problem is caused by a missing version-specific directory inside .dedop. For installation using an installer, this directory is automatically created at the end of the installation. I have made a fix so that this is also the case for installation by source.

If you could re-install the dedop-core by running python setup.py develop and then run dedop-studio again, this issue should be solved.

NOTE: I have also simplified the instruction to install dedop-core by source. It is now using a .yml file to list all the dependencies rather than including them individually in the conda command.

[dedop-cotton]

Thanks Hans, I am busy these next few days, but will try to reinstall according to your instructions. David

…

On 6 Feb 2018, at 09:39, Hans Permana ***@***.***> wrote: Hi David, This problem is caused by a missing version-specific directory inside .dedop. For installation using an installer, this directory is automatically created at the end of the installation. I have made a fix so that this is also the case for installation by source. If you could re-install the dedop-core by running python setup.py develop and then run dedop-studio again, this issue should be solved. NOTE: I have also simplified the instruction to install dedop-core by source. It is now using a .yml file to list all the dependencies rather than including them individually in the conda command. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#45 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AenaHqRfbYQ-LRXnaX8viQaLpIkb1eHoks5tSB2-gaJpZM4Runx2>.

[dedop-cotton]

Hi Hans, Sorry if I”m being a bit slow here. Get the same problem after (I think) following your instructions) I attach a screen shot of the entire terminal session: Regards David

…

On 6 Feb 2018, at 09:39, Hans Permana ***@***.***> wrote: Hi David, This problem is caused by a missing version-specific directory inside .dedop. For installation using an installer, this directory is automatically created at the end of the installation. I have made a fix so that this is also the case for installation by source. If you could re-install the dedop-core by running python setup.py develop and then run dedop-studio again, this issue should be solved. NOTE: I have also simplified the instruction to install dedop-core by source. It is now using a .yml file to list all the dependencies rather than including them individually in the conda command. — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#45 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AenaHqRfbYQ-LRXnaX8viQaLpIkb1eHoks5tSB2-gaJpZM4Runx2>.

[hans-permana]

Hi David,

Did you start from zero this time (i.e. remove no .dedop directory, brand new conda environment, git pull both dedop-core and dedop-studio repositories)? If so, I could not figure out what is going wrong. I tested it on our iMac with OSX 10.13.3 and it worked. If you are available, I would like to diagnose this via skype (or other similar screen sharing software) so we can get to the root of this faster. What do you think?

[dedop-cotton]

Hi Hans, No, this last time I just went back to the "python setup.py develop” step. A skype call could be useful, but possibly difficult to arrange. Are you available tomorrow morning? David Dr P.D. Cotton Satellite Oceanographic Consultants (SatOC) www.satoc.eu Direct: +44 (0)161 439 0833 Mobile: +44 (0)791 996 6335

…

On 8 Feb 2018, at 07:52, Hans Permana ***@***.***> wrote: Hi David, Did you start from zero this time (i.e. remove no .dedop directory, brand new conda environment, git pull both dedop-core and dedop-studio repositories)? If so, I could not figure out what is going wrong. I tested it on our iMac with OSX 10.13.3 and it worked. If you are available, I would like to diagnose this via skype (or other similar screen sharing software) so we can get to the root of this faster. What do you think? — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#45 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AenaHqybjis1DOM7LUC4ApphOa702HWSks5tSqfMgaJpZM4Runx2>.

[hans-permana]

Hi David,
Yes I am available tomorrow morning from 9.00 CET.

One thing that could be the cause of this problem: if you do conda list, do you see dedop on the list of dependencies? If so, try to run this command pip uninstall dedop so that it is not in the list anymore. After that, run python setup.py develop and run dedop-studio. But anyway, I will be available to support you tomorrow morning. We can talk more about it.

Hans

[dedop-cotton]

Hi Hans, Now I’m back from holiday and back in the office and trying to install dedop again. So I went back to the beginning, removed dedop directory, installed a brand new conda environment, git pulled dedop-core repository and installed that, now moved on to dedop studio installation - following instructions to install from source (at http://dedop-core.readthedocs.io/en/latest/user_manual/um_setup.html <http://dedop-core.readthedocs.io/en/latest/user_manual/um_setup.html>). completed

git clone https://github.com/DeDop/dedop-studio.git cd dedop-studio npm install

and come to the instruction to create a dedop-config.js and include the location of dedop-webapi.exe. webAPIConfig: { command: "C:\\Miniconda3\\envs\\dedop\\Scripts\\dedop-webapi.exe", servicePort: 2999, processOptions: {} } I can’t find a dedop-webapi.exe, but I can find a binary dedop-webapi under users\davidcotton\miniconda3\envs\dedop\bin I don’t have a …\dedop\scripts sub-directory Can you advise? Thanks! David Dr P.D. Cotton Satellite Oceanographic Consultants (SatOC) www.satoc.eu Direct: +44 (0)161 439 0833 Mobile: +44 (0)791 996 6335

…

On 8 Feb 2018, at 13:41, Hans Permana ***@***.***> wrote: Hi David, Yes I am available tomorrow morning from 9.00 CET. One thing that could be the cause of this problem: if you do conda list, do you see dedop on the list of dependencies? If so, try to run this command pip uninstall dedop so that it is not in the list anymore. After that, run python setup.py develop and run dedop-studio. But anyway, I will be available to support you tomorrow morning. We can talk more about it. Hans — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#45 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AenaHrj2Aep9yZPuY2zVIHmUdCcZBlPfks5tSvl9gaJpZM4Runx2>.