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Inputs
cjgabrie edited this page Feb 25, 2022
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BehaviorDEPOT requires a video file and associated pose-estimation file for each session to be run.
When performing batch analysis, BehaviorDEPOT accepts a single directory as input. Within the input directory, there should be folders for each session you want to analyze, each containing a video and a pose-estimation file.
Formats currently supported: MP4 and AVI *Other formats can be added; please contact authors if you have a particular format you would like to have integrated.
The default pose-estimation software for BehaviorDEPOT is DeepLabCut (https://github.com/DeepLabCut/DeepLabCut).
Accepted pose-estimation file formats include CSV and H5.