Skip to content

Commit 9f70c82

Browse files
committed
Fix typos
1 parent 92fbb78 commit 9f70c82

File tree

1 file changed

+9
-9
lines changed

1 file changed

+9
-9
lines changed

README.md

Lines changed: 9 additions & 9 deletions
Original file line numberDiff line numberDiff line change
@@ -62,7 +62,7 @@ Only when saving segmentation masks does a save file dialog pop up to name the d
6262
keypoint annotations are otherwise automatically saved in the corresponding folder as `CollectedData_<ScorerName>.h5`.
6363
- As a reminder, DLC will only use the H5 file; so be sure if you open already labeled images you save/overwrite the H5.
6464
- Note, before saving a layer, make sure the points layer is selected. If the user clicked on the image(s) layer first, does `Save As`, then closes the window, any labeling work during that session will be lost!
65-
- Modifying and then saving points in a `machinelabels...` layer will add to or overwrite the existing `CollectedData` layer and will **not** save to the `machinelabels` file.
65+
- Modifying and then saving points in a `machinelabels...` layer will add to or overwrite the existing `CollectedData` layer and will **not** save to the `machinelabels` file.
6666

6767

6868
### Video frame extraction and prediction refinement
@@ -109,10 +109,10 @@ Suggested workflows, depending on the image folder contents:
109109

110110
The process is analog to *2*.
111111
Open *napari* and open an image folder.
112-
If the video was originally labeled, *and* had outliers extracted it will contain a `CollectedData_<ScorerName>.h5` file and a `machinelabels-iter<#>.h5` file. In this case, select the `machinelabels` layer in the GUI, and type `e` to show edges. Red indicates likelihood < 0.6. As you navigate through frames, images with labels with edges will need to be refined (moved, deleted, etc). Images with labels without edges will be on the `CollectedData` (previous manual annotations) layer and shouldn't need refining. However, you can switch to that layer and fix errors. You can also right-click on the `CollectedData` layer and select `toggle visibility` to hide that layer. Select the `machinelabels` layer before saving which will append your refined annoations to `CollectedData`.
113-
114-
If the folder only had outliers extracted and wasn't originally labeled, it will not have a `CollectedData` layer. Work with the `machinelabels` layer selected to refine annoation positions, then save.
115-
112+
If the video was originally labeled, *and* had outliers extracted it will contain a `CollectedData_<ScorerName>.h5` file and a `machinelabels-iter<#>.h5` file. In this case, select the `machinelabels` layer in the GUI, and type `e` to show edges. Red indicates likelihood < 0.6. As you navigate through frames, images with labels with edges will need to be refined (moved, deleted, etc). Images with labels without edges will be on the `CollectedData` (previous manual annotations) layer and shouldn't need refining. However, you can switch to that layer and fix errors. You can also right-click on the `CollectedData` layer and select `toggle visibility` to hide that layer. Select the `machinelabels` layer before saving which will append your refined annotations to `CollectedData`.
113+
114+
If the folder only had outliers extracted and wasn't originally labeled, it will not have a `CollectedData` layer. Work with the `machinelabels` layer selected to refine annotation positions, then save.
115+
116116
In this case, it is not necessary to open the DLC project's `config.yaml` file, as all necessary metadata is read from the `h5` data file.
117117

118118
Saving works as described in *1*.
@@ -134,14 +134,14 @@ graph TD
134134
id4[Add labels to, or modify in, \n `CollectedData...` layer and save that layer]
135135
id5[Modify labels in `machinelabels` layer and save \n which will create a `CollectedData...` file]
136136
id6[Have you refined some labels from the most recent iteration and saved already?]
137-
id7["All extracted frames are already saved in `CollectedData...`.
137+
id7["All extracted frames are already saved in `CollectedData...`.
138138
1. Hide or trash all `machinelabels` layers.
139139
2. Then modify in and save `CollectedData`"]
140140
id8["
141-
1. hide or trash all `machinelabels` layers except for the most recent.
142-
2. Select most recent `machinelabels` and hit `e` to show edges.
141+
1. hide or trash all `machinelabels` layers except for the most recent.
142+
2. Select most recent `machinelabels` and hit `e` to show edges.
143143
3. Modify only in `machinelabels` and skip frames with labels without edges shown.
144-
4. Save `machinelabels` layer, which will add data to `CollectedData`.
144+
4. Save `machinelabels` layer, which will add data to `CollectedData`.
145145
- If you need to revisit this video later, ignore `machinelabels` and work only in `CollectedData`"]
146146
147147
id1 -->|I need to manually label new frames \n or fix my labels|id2

0 commit comments

Comments
 (0)