only 1 shard for now #3
alpaeAnnotations
12 errors and 8 warnings
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Test pipeline FastOMA.Run with profile test:
Test pipeline FastOMA#L1
java.io.FileNotFoundException: nf-tests/.nftignore (No such file or directory)
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Test pipeline | conda | latest-everything | 1/5
Process completed with exit code 1.
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Test pipeline FastOMA.Run with profile test:
Test pipeline FastOMA#L1
java.io.FileNotFoundException: nf-tests/.nftignore (No such file or directory)
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Test pipeline | singularity | latest-everything | 1/5
Process completed with exit code 1.
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Test pipeline FastOMA.Run with profile test:
Test pipeline FastOMA#L1
java.io.FileNotFoundException: nf-tests/.nftignore (No such file or directory)
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Test pipeline | singularity | 24.10.2 | 1/5
Process completed with exit code 1.
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Test pipeline FastOMA.Run with profile test:
Test pipeline FastOMA#L1
java.io.FileNotFoundException: nf-tests/.nftignore (No such file or directory)
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Test pipeline | conda | 24.10.2 | 1/5
Process completed with exit code 1.
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Test pipeline FastOMA.Run with profile test:
Test pipeline FastOMA#L1
java.io.FileNotFoundException: nf-tests/.nftignore (No such file or directory)
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Test pipeline | docker | 24.10.2 | 1/5
Process completed with exit code 1.
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Test pipeline FastOMA.Run with profile test:
Test pipeline FastOMA#L1
java.io.FileNotFoundException: nf-tests/.nftignore (No such file or directory)
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Test pipeline | docker | latest-everything | 1/5
Process completed with exit code 1.
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Test pipeline | conda | latest-everything | 1/5
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Test pipeline | conda | latest-everything | 1/5
/home/runner/miniconda3/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Test workflow | conda | latest-everything | 1/5
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Test workflow | conda | latest-everything | 1/5
/home/runner/miniconda3/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Test pipeline | conda | 24.10.2 | 1/5
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Test pipeline | conda | 24.10.2 | 1/5
/home/runner/miniconda3/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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Test workflow | conda | 24.10.2 | 1/5
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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Test workflow | conda | 24.10.2 | 1/5
/home/runner/miniconda3/lib/python3.13/site-packages/conda/base/context.py:211: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.9.
To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels:
conda config --add channels defaults
For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html
deprecated.topic(
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