fix resource requirements

Author: alpae

FastOMA.nf

@@ -260,12 +260,12 @@ process hog_big{
   memory { 
     def max_filesize = Utils.getMaxFileSize(rhogsbig)
     def mem_base = Utils.mem_cat( max_filesize, nr_species as int )
-    return Math.max( 6.GB, mem_base ) * params.memory_multiplier * task.attempt
+    return [6.GB, mem_base].max() * params.memory_multiplier * task.attempt
   }
   time {
     def max_filesize = Utils.getMaxFileSize(rhogsbig)
     def time_base = Utils.time_cat(max_filesize, nr_species as int)
-    return Math.max( 2.h, time_base) * params.time_multiplier * task.attempt 
+    return [2.h, time_base].max() * params.time_multiplier * task.attempt 
   }
 
   publishDir path: params.temp_output, enabled: params.debug_enabled, pattern: "pickle_hogs"

conf/base.config

@@ -44,25 +44,12 @@ process {
     withName: "infer_roothogs" {
         memory = {
             def nr_genomes  = hogmaps.size()
-            def base_memory = 516.MB + (nr_genomes * 32.MB) 
+            def base_memory = 2.GB + (nr_genomes * 32.MB) 
             return base_memory * task.attempt * params.memory_multiplier
         }
         time   = { 12.h * task.attempt * params.time_multiplier }
     }
 
-    withName: "hog_big" {
-        memory = { 
-            def max_filesize = Utils.getMaxFileSize(rhogsbig)
-            def mem_base = Utils.mem_cat( max_filesize, nr_species as int )
-            return Math.max( 6.GB, mem_base ) * params.memory_multiplier * task.attempt
-        }
-        time = {
-            def max_filesize = Utils.getMaxFileSize(rhogsbig)
-            def time_base = Utils.time_cat(max_filesize, nr_species as int)
-            return Math.max( 2.h, time_base) * params.time_multiplier * task.attempt 
-        }
-    }
-
     withName: "collect_subhogs" {
         cpus   = { 1 }
     }