Missing: General-purpose pre-trained model

[sahoo-rk]

Hi @cactuskid
Nice to see the development of the FT2. I am trying to give a try. Particularly, I am interested in using your pre-trained model to reconstruct a phylogeny as mentioned over the 'Basic Workflow'. However, the model 'mergeddecoder_foldtree2_test' and associated files (e.g., mergeddecoder_foldtree2_test.pt, mergeddecoder_foldtree2_test_pair_counts.pkl) are currently missing, as I tried on 12 Jan 2026.

Any lead in this aspect would be helpful. Thanks.

[cactuskid]

hi. thanks for the comment. I haven't updated these files in the git yet for the latest trained models. I was just working on the main branch since i didnt think anyone was using this project yet and a few things are broken... im going to update the models in a few days and make sure everything runs end to end. then ill switch to a cleaner dev strategy. ill let you know on here and update the readme with the latest instructions on running the pipeline.

[sahoo-rk]

Thanks for the reply. I look forward to the updates.