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11 files changed

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-27
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‎modules/local/browser_aux/main.nf‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
process GEN_BROWSER_AUX_FILES {
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label "process_single"
3-
container "dessimozlab/omabuild:edge"
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container "dessimozlab/omabuild:1.0.0"
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input:
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path db

‎modules/local/cache_builder/main.nf‎

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@@ -2,7 +2,7 @@
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process GENERATE_JOBS {
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label "process_single"
5-
container "dessimozlab/omabuild:edge"
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container "dessimozlab/omabuild:1.0.0"
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input:
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path db
@@ -28,7 +28,7 @@ process GENERATE_JOBS {
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process COMPUTE_CACHE {
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label "process_single"
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label "HIGH_IO_ACCESS"
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container "dessimozlab/omabuild:edge"
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container "dessimozlab/omabuild:1.0.0"
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tag "Cache builder ${job_file}"
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input:
@@ -54,7 +54,7 @@ process COMPUTE_CACHE {
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process COMBINE_JOBS {
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label "process_single"
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container "dessimozlab/omabuild:edge"
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container "dessimozlab/omabuild:1.0.0"
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input:
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path(job_res, stageAs: "res???/*")

‎modules/local/darwin_extract/main.nf‎

Lines changed: 5 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,7 @@
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process CONVERT_GS {
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tag "Convert GenomeSummaries to JSON format"
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label "process_single"
4-
container "dessimozlab/omadarwin:edge"
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container "dessimozlab/omadarwin:1.0.0"
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input:
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path genomes
@@ -29,7 +29,7 @@ process CONVERT_GS {
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process CONVERT_PROTEINS {
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tag "Convert Proteins from ${genome.UniProtSpeciesCode} to JSON format"
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label "process_single"
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container "dessimozlab/omadarwin:edge"
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container "dessimozlab/omadarwin:1.0.0"
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input:
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tuple val(genome), path(dbpath), path(subgenome)
@@ -56,7 +56,7 @@ process CONVERT_PROTEINS {
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process CONVERT_OMA_GROUPS {
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tag "Extract OMA Groups"
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label "process_single"
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container "dessimozlab/omabuild:edge"
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container "dessimozlab/omabuild:1.0.0"
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input:
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path matrix_file
@@ -73,7 +73,7 @@ process CONVERT_OMA_GROUPS {
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process CONVERT_SPLICE_MAP {
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tag "Convert Splicing information to json"
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label "process_single"
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container "dessimozlab/omadarwin:edge"
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container "dessimozlab/omadarwin:1.0.0"
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input:
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path splice_drw
@@ -99,7 +99,7 @@ process CONVERT_SPLICE_MAP {
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process CONVERT_TAXONOMY {
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tag "Convert Taxonomy of genomes using omataxonomy"
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label "process_single"
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container "dessimozlab/omabuild:edge"
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container "dessimozlab/omabuild:1.0.0"
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input:
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path gs_tsv

‎modules/local/domains/main.nf‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -2,7 +2,7 @@
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process ADD_DOMAINS {
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label "process_single"
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label "process_medium_memory"
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container "dessimozlab/omabuild:edge"
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container "dessimozlab/omabuild:1.0.0"
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input:
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path database

‎modules/local/edgehog/main.nf‎

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Original file line numberDiff line numberDiff line change
@@ -3,7 +3,7 @@ process EDGEHOG {
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label "single_process"
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label "process_long"
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label "process_high_memory"
6-
container "dessimozlab/omabuild:edge"
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container "dessimozlab/omabuild:1.0.0"
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input:
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path augmented_orthoxml

‎modules/local/go_import/main.nf‎

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Original file line numberDiff line numberDiff line change
@@ -3,7 +3,7 @@
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process GO_IMPORT {
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label "process_single"
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label "HIGH_IO_ACCESS"
6-
container "dessimozlab/omabuild:edge"
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container "dessimozlab/omabuild:1.0.0"
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input:
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path xref_db

‎modules/local/h5_combine/main.nf‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
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process COMBINE_HDF {
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label "process_single"
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container "dessimozlab/omabuild:edge"
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container "dessimozlab/omabuild:1.0.0"
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input:
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path h5files

‎modules/local/hdf5import/main.nf‎

Lines changed: 5 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -2,7 +2,7 @@
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process ADD_GENOMES {
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label "process_single"
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label "process_long"
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container "dessimozlab/omabuild:edge"
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container "dessimozlab/omabuild:1.0.0"
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input:
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path gs_tsv
@@ -35,7 +35,7 @@ process ADD_GENOMES {
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process BUILD_SEQINDEX {
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label "process_single"
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label "process_medium_memory"
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container "dessimozlab/omabuild:edge"
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container "dessimozlab/omabuild:1.0.0"
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input:
@@ -59,7 +59,7 @@ process BUILD_SEQINDEX {
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process BUILD_HOG_H5 {
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label "process_low"
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label "process_medium_memory"
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container "dessimozlab/omabuild:edge"
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container "dessimozlab/omabuild:1.0.0"
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input:
@@ -92,7 +92,7 @@ process BUILD_HOG_H5 {
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process ADD_PAIRWISE_ORTHOLOGS {
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label "process_medium"
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container "dessimozlab/omabuild:edge"
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container "dessimozlab/omabuild:1.0.0"
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input:
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path database
@@ -119,7 +119,7 @@ process ADD_PAIRWISE_ORTHOLOGS {
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process COMBINE_H5_FILES {
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label "process_single"
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container "dessimozlab/omabuild:edge"
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container "dessimozlab/omabuild:1.0.0"
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input:
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path input_db, stageAs: 'OmaServer_input.h5'

‎modules/local/hogprop/main.nf‎

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -37,7 +37,7 @@ process HOGPROP {
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process HOGPROP_COLLECT {
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label "process_single"
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label "process_high_memory"
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container "dessimozlab/omabuild:edge"
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container "dessimozlab/omabuild:1.0.0"
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input:
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path "results/*"

‎modules/local/xref_fetch/main.nf‎

Lines changed: 7 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,7 @@
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process FETCH_REFSEQ {
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label "process_low"
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container "dessimozlab/omabuild:edge"
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container "dessimozlab/omabuild:1.0.0"
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output:
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path "*.gpff.gz", emit: refseq_proteins
@@ -17,7 +17,7 @@ process FETCH_REFSEQ {
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process FILTER_AND_SPLIT {
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tag "$source"
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label "process_single"
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container "dessimozlab/omabuild:edge"
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container "dessimozlab/omabuild:1.0.0"
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input:
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tuple path(xref), val(format), val(source)
@@ -37,7 +37,7 @@ process FILTER_AND_SPLIT {
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process RELEVANT_TAXID_MAP {
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label "process_single"
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container "dessimozlab/omabuild:edge"
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container "dessimozlab/omabuild:1.0.0"
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input:
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path gs_tsv
@@ -68,7 +68,7 @@ process MAP_XREFS {
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label "process_single"
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label "process_long"
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label "HIGH_IO_ACCESS"
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container "dessimozlab/omabuild:edge"
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container "dessimozlab/omabuild:1.0.0"
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input:
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tuple path(xref_in), val(format), val(source),
@@ -96,7 +96,7 @@ process MAP_XREFS {
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process COLLECT_XREFS {
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label "process_single"
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container "dessimozlab/omabuild:edge"
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container "dessimozlab/omabuild:1.0.0"
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tag "Collecting xrefs for $source"
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input:
@@ -119,7 +119,7 @@ process COLLECT_XREFS {
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process COMBINE_ALL_XREFS {
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label "process_single"
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container "dessimozlab/omabuild:edge"
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container "dessimozlab/omabuild:1.0.0"
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tag "Combining all xrefs into single hdf5 db"
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input:
@@ -138,7 +138,7 @@ process COMBINE_ALL_XREFS {
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process BUILD_REDUCED_XREFS {
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label "process_low"
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container "dessimozlab/omabuild:edge"
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container "dessimozlab/omabuild:1.0.0"
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tag "Building a reduced set of xrefs for lookup and search"
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input:

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