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Welcome to the read2tree wiki!
This wiki contains useful information for the read2tree package.
Read2Tree is a package to infer Multiple Sequence Alignment which could be used to infer thee species tree. The input of R2T is DNA/RNA sequencing reads.
You can see how different Read2Tree is compared to the standard pipeline in the following image.
Yo could also how it works and the intermediate files as follow
We actively help users to set up their system to use Read2Tree. Feel free to create a new issue here or contact us by email.
If you want to reproduce the results of the Read2Paper, you may check here. Specifically, for covid analysis, check out this instruction.
We were able to infer the phylogeny for 10,283 covid species within reasonable computation time.
