Log traceback when encountering exceptions in Contexts

Author: tieneupin

src/murfey/client/contexts/spa.py

@@ -506,7 +506,8 @@ def post_transfer(
                         except Exception as e:
                             # try to continue if position information gathering fails so that movie is processed anyway
                             logger.warning(
-                                f"Unable to register foil hole for {str(file_transferred_to)}. Exception: {str(e)}"
+                                f"Unable to register foil hole for {str(file_transferred_to)}. Exception: {str(e)}",
+                                exc_info=True,
                             )
                             foil_hole = None
 

src/murfey/client/contexts/tomo.py

@@ -173,7 +173,7 @@ def register_tomography_data_collections(
                         )
 
         except Exception as e:
-            logger.error(f"ERROR {e}, {self.data_collection_parameters}")
+            logger.error(f"ERROR {e}, {self.data_collection_parameters}", exc_info=True)
 
     def _file_transferred_to(
         self, environment: MurfeyInstanceEnvironment, source: Path, file_path: Path
@@ -533,7 +533,9 @@ def gather_metadata(
                     try:
                         for_parsing = xml.read()
                     except Exception:
-                        logger.warning(f"Failed to parse file {metadata_file}")
+                        logger.warning(
+                            f"Failed to parse file {metadata_file}", exc_info=True
+                        )
                         return OrderedDict({})
                     data = xmltodict.parse(for_parsing)
                 try:
@@ -628,7 +630,9 @@ def gather_metadata(
                     / int(mdoc_metadata["num_eer_frames"])
                 )
         except Exception as e:
-            logger.error(f"Exception encountered in metadata gathering: {str(e)}")
+            logger.error(
+                f"Exception encountered in metadata gathering: {str(e)}", exc_info=True
+            )
             return OrderedDict({})
 
         return mdoc_metadata