test fixing

Author: d-j-hatton

tests/client/test_analyser.py

@@ -85,7 +85,7 @@ def test_find_context(file_and_context, tmp_path):
     file_name, context = file_and_context
 
     # Pass the file to the Analyser; add environment as needed
-    analyser = Analyser(basepath_local=tmp_path)
+    analyser = Analyser(basepath_local=tmp_path, token="")
 
     # Check that the results are as expected
     assert analyser._find_context(tmp_path / file_name)
@@ -115,13 +115,13 @@ def test_find_context(file_and_context, tmp_path):
 
 @pytest.mark.parametrize("bad_file", contextless_files)
 def test_ignore_contextless_files(bad_file, tmp_path):
-    analyser = Analyser(tmp_path)
+    analyser = Analyser(tmp_path, "")
     assert not analyser._find_context(tmp_path / bad_file)
     assert not analyser._context
 
 
 def test_analyser_setup_and_stopping(tmp_path):
-    analyser = Analyser(tmp_path)
+    analyser = Analyser(tmp_path, "")
     assert analyser.queue.empty()
     analyser.start()
     assert analyser.thread.is_alive()
@@ -132,7 +132,7 @@ def test_analyser_setup_and_stopping(tmp_path):
 
 def test_analyser_tomo_determination(tmp_path):
     tomo_file = tmp_path / "Position_1_[30.0].tiff"
-    analyser = Analyser(tmp_path)
+    analyser = Analyser(tmp_path, "")
     analyser.start()
     analyser.queue.put(tomo_file)
     analyser.stop()
@@ -141,7 +141,7 @@ def test_analyser_tomo_determination(tmp_path):
 
 def test_analyser_epu_determination(tmp_path):
     tomo_file = tmp_path / "FoilHole_12345_Data_6789_Fractions.tiff"
-    analyser = Analyser(tmp_path)
+    analyser = Analyser(tmp_path, "")
     analyser.start()
     analyser.queue.put(tomo_file)
     analyser.stop()

tests/client/test_context.py

@@ -28,7 +28,7 @@ def test_tomography_context_add_tomo_tilt(mock_post, mock_get, tmp_path):
         visit="test",
         murfey_session=1,
     )
-    context = TomographyContext("tomo", tmp_path)
+    context = TomographyContext("tomo", tmp_path, "")
     (tmp_path / "Position_1_001_[30.0]_date_time_fractions.tiff").touch()
     context.post_transfer(
         tmp_path / "Position_1_001_[30.0]_date_time_fractions.tiff",
@@ -85,7 +85,7 @@ def test_tomography_context_add_tomo_tilt_out_of_order(mock_post, mock_get, tmp_
         visit="test",
         murfey_session=1,
     )
-    context = TomographyContext("tomo", tmp_path)
+    context = TomographyContext("tomo", tmp_path, "")
     (tmp_path / "Position_1_001_[30.0]_date_time_fractions.tiff").touch()
     context.post_transfer(
         tmp_path / "Position_1_001_[30.0]_date_time_fractions.tiff",
@@ -170,7 +170,7 @@ def test_tomography_context_add_tomo_tilt_delayed_tilt(mock_post, mock_get, tmp_
         visit="test",
         murfey_session=1,
     )
-    context = TomographyContext("tomo", tmp_path)
+    context = TomographyContext("tomo", tmp_path, "")
     (tmp_path / "Position_1_001_[30.0]_date_time_fractions.tiff").touch()
     context.post_transfer(
         tmp_path / "Position_1_001_[30.0]_date_time_fractions.tiff",
@@ -214,7 +214,7 @@ def test_tomography_context_add_tomo_tilt_delayed_tilt(mock_post, mock_get, tmp_
 
 
 def test_tomography_context_initialisation_for_serialem(tmp_path):
-    context = TomographyContext("serialem", tmp_path)
+    context = TomographyContext("serialem", tmp_path, "")
     assert not context._completed_tilt_series
     assert context._acquisition_software == "serialem"
 
@@ -235,7 +235,7 @@ def test_setting_tilt_series_size_and_completion_from_mdoc_parsing(
         visit="test",
         murfey_session=1,
     )
-    context = TomographyContext("tomo", tmp_path)
+    context = TomographyContext("tomo", tmp_path, "")
     assert len(context._tilt_series_sizes) == 0
     context.post_transfer(
         Path(__file__).parent.parent / "util" / "test_1.mdoc",

tests/client/tui/test_main.py

@@ -60,6 +60,7 @@ def test_get_visit_list(
         base_url=server_url,
         router_name="session_control.router",
         function_name="get_current_visits",
+        token="",
         instrument_name=instrument_name,
     )