Modified URLs for CLEM preprocesisng API endpoints

Author: tieneupin

src/murfey/client/contexts/clem.py

@@ -386,7 +386,7 @@ def process_lif_file(
 
         try:
             # Construct the URL to post the request to
-            url = f"{str(environment.url.geturl())}/sessions/{environment.murfey_session}/lif_to_stack?lif_file={quote(str(lif_file), safe='')}"
+            url = f"{str(environment.url.geturl())}/sessions/{environment.murfey_session}/clem/preprocessing/lif_to_stack?lif_file={quote(str(lif_file), safe='')}"
             # Validate
             if not url:
                 logger.error(
@@ -442,7 +442,7 @@ def process_tiff_series(
 
         try:
             # Construct URL for Murfey server to communicate with
-            url = f"{str(environment.url.geturl())}/sessions/{environment.murfey_session}/tiff_to_stack"
+            url = f"{str(environment.url.geturl())}/sessions/{environment.murfey_session}/clem/preprocessing/tiff_to_stack"
             if not url:
                 logger.error(
                     "URL could not be constructed from the environment and file path"

src/murfey/server/api/clem.py

@@ -631,7 +631,9 @@ def register_image_stack(
 """
 
 
-@router.post("/sessions/{session_id}/lif_to_stack")  # API posts to this URL
+@router.post(
+    "/sessions/{session_id}/clem/preprocessing/lif_to_stack"
+)  # API posts to this URL
 def lif_to_stack(
     session_id: int,  # Used by the decorator
     lif_file: Path,
@@ -669,7 +671,7 @@ def lif_to_stack(
         raise RuntimeError("The relevant Murfey workflow was not found")
 
 
-@router.post("/sessions/{session_id}/tiff_to_stack")
+@router.post("/sessions/{session_id}/clem/preprocessing/tiff_to_stack")
 def tiff_to_stack(
     session_id: int,  # Used by the decorator
     tiff_info: TIFFSeriesInfo,