Not using atlas binning at the moment

Author: stephen-riggs

src/murfey/client/contexts/tomo_metadata.py

@@ -84,11 +84,6 @@ def post_transfer(
                         "numericValue"
                     ]
                 )
-                atlas_binning = int(
-                    atlas_xml_data["MicroscopeImage"]["microscopeData"]["acquisition"][
-                        "camera"
-                    ]["Binning"]["a:x"]
-                )
 
             for p in partial_path.split("/"):
                 if p.startswith("Sample"):
@@ -115,7 +110,6 @@ def post_transfer(
                 ),
                 "sample": environment.samples[source].sample,
                 "atlas_pixel_size": atlas_pixel_size,
-                "atlas_binning": atlas_binning,
             }
             capture_post(url, json=dcg_data)
 

src/murfey/server/api/workflow.py

@@ -84,7 +84,6 @@ class DCGroupParameters(BaseModel):
     atlas_pixel_size: float = 0
     atlas_size_x: int = 0
     atlas_size_y: int = 0
-    atlas_binning: int = 1
 
 
 @router.post("/visits/{visit_name}/{session_id}/register_data_collection_group")
@@ -108,9 +107,6 @@ def register_dc_group(
         dcg_murfey[0].atlas_pixel_size = (
             dcg_params.atlas_pixel_size or dcg_murfey[0].atlas_pixel_size
         )
-        dcg_murfey[0].atlas_binning = (
-            dcg_params.atlas_binning or dcg_murfey[0].atlas_binning
-        )
 
         if _transport_object:
             if dcg_murfey[0].atlas_id is not None:
@@ -124,7 +120,6 @@ def register_dc_group(
                         "atlas_pixel_size": dcg_params.atlas_pixel_size,
                         "atlas_size_x": dcg_params.atlas_size_x,
                         "atlas_size_y": dcg_params.atlas_size_y,
-                        "atlas_binning": dcg_params.atlas_binning,
                         "dcgid": dcg_murfey[0].id,
                         "session_id": session_id,
                     },
@@ -151,7 +146,6 @@ def register_dc_group(
             "atlas": dcg_params.atlas,
             "sample": dcg_params.sample,
             "atlas_pixel_size": dcg_params.atlas_pixel_size,
-            "atlas_binning": dcg_params.atlas_binning,
         }
 
         if _transport_object:

src/murfey/util/db.py

@@ -380,7 +380,6 @@ class DataCollectionGroup(SQLModel, table=True):  # type: ignore
     atlas_id: Optional[int] = None
     atlas_pixel_size: Optional[float] = None
     atlas: str = ""
-    atlas_binning: Optional[int] = None
     sample: Optional[int] = None
     session: Optional[Session] = Relationship(back_populates="data_collection_groups")
     data_collections: List["DataCollection"] = Relationship(

src/murfey/util/tomo_metadata.py

@@ -158,7 +158,6 @@ def register_search_map_in_database(
             search_map.height,
             search_map.width,
             dcg.atlas_pixel_size,
-            dcg.atlas_binning,
         ]
     ):
         reference_shift_matrix = np.array(