Updated 'lif_to_stack' API endpoint to load and pass on more information

Author: tieneupin

src/murfey/server/api/clem.py

@@ -635,6 +635,7 @@ def register_image_stack(
 def lif_to_stack(
     session_id: int,  # Used by the decorator
     lif_file: Path,
+    db: Session = murfey_db,
 ):
     # Get command line entry point
     murfey_workflows = entry_points().select(
@@ -643,14 +644,26 @@ def lif_to_stack(
 
     # Use entry point if found
     if len(murfey_workflows) == 1:
+
+        # Get instrument name from the database
+        # This is needed in order to load the correct config file
+        row: MurfeySession = db.exec(
+            select(MurfeySession).where(MurfeySession.id == session_id)
+        ).one()
+        instrument_name = row.instrument_name
+
+        # Pass arguments along to the correct workflow
         workflow: EntryPoint = list(murfey_workflows)[0]
         workflow.load()(
             # Match the arguments found in murfey.workflows.lif_to_stack
             file=lif_file,
             root_folder="images",
+            session_id=session_id,
+            instrument_name=instrument_name,
             messenger=_transport_object,
         )
         return True
+
     # Raise error if Murfey workflow not found
     else:
         raise RuntimeError("The relevant Murfey workflow was not found")