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Don't accept NaN slit widths (#413)
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src/murfey/client/contexts/tomo.py

Lines changed: 3 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -745,7 +745,9 @@ def gather_metadata(
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mdoc_metadata["tag"] = str(self._basepath)
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mdoc_metadata["tilt_series_tag"] = metadata_file.stem
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mdoc_metadata["exposure_time"] = float(mdoc_data_block["ExposureTime"])
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mdoc_metadata["slit_width"] = float(mdoc_data_block["FilterSlitAndLoss"][0])
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slit_width = mdoc_data_block["FilterSlitAndLoss"][0]
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if slit_width.lower() != "nan":
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mdoc_metadata["slit_width"] = float(slit_width)
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mdoc_metadata["file_extension"] = (
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f".{mdoc_data_block['SubFramePath'].split('.')[-1]}"
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)

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