Rename of tomo_preproc functions

Author: stephen-riggs

src/murfey/server/__init__.py

@@ -189,7 +189,7 @@ def get_job_ids(tilt_series_id: int, appid: int) -> JobIDs:
     )
 
 
-def get_tomo_preproc_params(dcg_id: int, *args) -> db.TomographyProcessingParameters:
+def get_tomo_proc_params(dcg_id: int, *args) -> db.TomographyProcessingParameters:
     results = murfey_db.exec(
         select(db.TomographyProcessingParameters).where(
             db.TomographyProcessingParameters.dcg_id == dcg_id
@@ -1651,7 +1651,7 @@ def _flush_tomography_preprocessing(message: dict):
         .where(db.DataCollectionGroup.session_id == session_id)
         .where(db.DataCollectionGroup.tag == message["data_collection_group_tag"])
     ).first()
-    proc_params = get_tomo_preproc_params(collected_ids.id)
+    proc_params = get_tomo_proc_params(collected_ids.id)
     if not proc_params:
         visit_name = message["visit_name"].replace("\r\n", "").replace("\n", "")
         logger.warning(
@@ -2151,7 +2151,7 @@ def feedback_callback(header: dict, message: dict) -> None:
                 ]
                 tilts = get_all_tilts(relevant_tilt_series.id)
                 ids = get_job_ids(relevant_tilt_series.id, alignment_ids[2].id)
-                preproc_params = get_tomo_preproc_params(ids.dcgid)
+                preproc_params = get_tomo_proc_params(ids.dcgid)
                 stack_file = (
                     Path(message["mrc_out"]).parents[3]
                     / "Tomograms"

src/murfey/server/api/__init__.py

@@ -42,7 +42,7 @@
     get_job_ids,
     get_machine_config,
     get_microscope,
-    get_tomo_preproc_params,
+    get_tomo_proc_params,
     sanitise,
     templates,
 )
@@ -617,7 +617,7 @@ def post_foil_hole(
 
 
 @router.post("/sessions/{session_id}/tomography_processing_parameters")
-def register_tomo_preproc_params(
+def register_tomo_proc_params(
     session_id: MurfeySessionID, proc_params: ProcessingParametersTomo, db=murfey_db
 ):
     session_processing_parameters = db.exec(
@@ -767,7 +767,7 @@ def register_completed_tilt_series(
             ]
             tilts = get_all_tilts(ts.id)
             ids = get_job_ids(ts.id, collected_ids[3].id)
-            preproc_params = get_tomo_preproc_params(ids.dcgid)
+            preproc_params = get_tomo_proc_params(ids.dcgid)
 
             first_tilt = db.exec(
                 select(Tilt).where(Tilt.tilt_series_id == ts.id)

src/murfey/server/demo_api.py

@@ -475,7 +475,7 @@ def register_spa_proc_params(
 
 
 @router.post("/sessions/{session_id}/tomography_processing_parameters")
-def register_tomo_preproc_params(
+def register_tomo_proc_params(
     session_id: MurfeySessionID, proc_params: ProcessingParametersTomo, db=murfey_db
 ):
     log.info(