Added Helm charts to create an instrument server for TEM workflow

Author: tieneupin

Helm/Chart.yaml

@@ -3,6 +3,7 @@ name: murfey-services
 description: Umbrella Helm chart for deploying the servers and daemons needed to enable Murfey to transfer and process data
 version: 0.16.12
 dependencies:
+  - name: murfey-instrument-server-clem
   - name: murfey-instrument-server-clem
   - name: murfey-server
   - name: murfey-rsync

Helm/charts/murfey-instrument-server-tem/Chart.yaml

@@ -0,0 +1,4 @@
+apiVersion: v1
+name: murfey-instrument-server-tem
+description: Helm chart for deploying a Murfey instrument server, which executes orders to detect, modify, and transfer files on the instrument PC, and notifies the backend server about transferred files
+version: 0.16.12

Helm/charts/murfey-instrument-server-tem/templates/deployment.yaml

@@ -0,0 +1,68 @@
+apiVersion: v1
+kind: Service
+metadata:
+  name: {{ .Values.appName }}
+  namespace: {{ .Values.global.namespace }}
+  labels:
+    app: {{ .Values.appName }}
+spec:
+  type: LoadBalancer
+  externalTrafficPolicy: Cluster
+  ports:
+    {{- toYaml .Values.servicePorts | nindent 2 }}
+  selector:
+    app: {{ .Values.appName }}
+---
+apiVersion: apps/v1
+kind: Deployment
+metadata:
+  name: {{ .Values.appName }}
+  namespace: {{ .Values.global.namespace }}
+  labels:
+    app: {{ .Values.appName }}
+spec:
+  replicas: {{ .Values.replicas }}
+  selector:
+    matchLabels:
+      app: {{ .Values.appName }}
+  template:
+    metadata:
+      labels:
+        app: {{ .Values.appName }}
+    spec:
+      securityContext:
+        runAsUser: {{ .Values.global.runAsUser }}
+        runAsGroup: {{ .Values.global.runAsGroup }}
+      volumes:
+        # Mount config files from secrets
+        - name: murfey-client-config
+          secret:
+            secretName: {{ .Values.global.murfeyClientConfigCLEMSecretName }}
+            items:
+              - key: {{ .Values.global.murfeyClientConfigCLEMFileName }}
+                path: .murfey
+        # Mount data directories
+        {{- toYaml .Values.extraVolumes | nindent 8 }}
+      containers:
+        - name: {{ .Values.appName }}
+          image: {{ .Values.image }}
+          imagePullPolicy: Always
+          securityContext:
+            privileged: false
+          volumeMounts:
+            # Mount Murfey client config
+            - name: murfey-client-config
+              mountPath: /murfey/config/.murfey
+              subPath: .murfey
+              readOnly: false
+            # Mount data directories
+            {{- toYaml .Values.extraVolumeMounts | nindent 12 }}
+          env:
+            - name: MURFEY_CLIENT_CONFIG_HOME
+              value: "/tmp"
+          ports:
+            - containerPort: {{ .Values.containerPort }}
+          command:
+            {{- toYaml .Values.command | nindent 12 }}
+          args:
+            {{- toYaml .Values.args | nindent 12 }}