Applied recommended changes

Author: tieneupin

src/murfey/client/tui/screens.py

@@ -1012,7 +1012,7 @@ def compose(self):
                                     name_root += st
                                 if dest_num:
                                     dest = str(
-                                        dest_path.parent / f"{name_root}{dest_num+1}"
+                                        dest_path.parent / f"{name_root}{dest_num + 1}"
                                     )
                                 else:
                                     dest = str(dest_path.parent / f"{name_root}2")

src/murfey/server/api/bootstrap.py

@@ -308,7 +308,7 @@ def parse_cygwin_request(
         raise ValueError(f"{request_path!r} is not a valid request path")
 
     try:
-        url = f'{find_cygwin_mirror()}{quote(request_path, safe="/")}'
+        url = f"{find_cygwin_mirror()}{quote(request_path, safe='/')}"
     except Exception:
         raise HTTPException(
             status_code=503, detail="Could not identify a suitable Cygwin mirror"
@@ -533,7 +533,7 @@ def get_msys2_environment_index(
         raise ValueError(f"{system!r} is not a valid msys2 environment")
 
     # Construct URL to main MSYS repo and get response
-    arch_url = f'{msys2_url}/{quote(system, safe="/")}'
+    arch_url = f"{msys2_url}/{quote(system, safe='/')}"
     response = http_session.get(arch_url)
 
     # Parse and rewrite package index content
@@ -579,7 +579,7 @@ def get_msys2_package_index(
 
     # Construct URL to main MSYS repo and get response
     package_list_url = (
-        f'{msys2_url}/{quote(system, safe="/")}/{quote(environment, safe="/")}'
+        f"{msys2_url}/{quote(system, safe='/')}/{quote(environment, safe='/')}"
     )
     response = http_session.get(package_list_url)
     return Response(
@@ -617,7 +617,7 @@ def get_msys2_package_file(
         raise ValueError(f"{package!r} is not a valid package name")
 
     # Construct URL to main MSYS repo and get response
-    package_url = f'{msys2_url}/{quote(system, safe="/")}/{quote(environment, safe="/")}/{quote(package, safe="/")}'
+    package_url = f"{msys2_url}/{quote(system, safe='/')}/{quote(environment, safe='/')}/{quote(package, safe='/')}"
     response = http_session.get(package_url)
     if response.status_code != 200:
         raise HTTPException(status_code=response.status_code)

src/murfey/server/feedback.py

@@ -1266,7 +1266,7 @@ def _register_3d_batch(message: dict, _db, demo: bool = False):
             other_options["initial_model"] = str(rescaled_initial_model_path)
             next_job = feedback_params.next_job
             class3d_dir = (
-                f"{class3d_message['class3d_dir']}{(feedback_params.next_job+1):03}"
+                f"{class3d_message['class3d_dir']}{(feedback_params.next_job + 1):03}"
             )
             feedback_params.next_job += 1
             _db.add(feedback_params)
@@ -1305,7 +1305,7 @@ def _register_3d_batch(message: dict, _db, demo: bool = False):
         # For the first batch, start a container and set the database to wait
         next_job = feedback_params.next_job
         class3d_dir = (
-            f"{class3d_message['class3d_dir']}{(feedback_params.next_job+1):03}"
+            f"{class3d_message['class3d_dir']}{(feedback_params.next_job + 1):03}"
         )
         class3d_grp_uuid = _murfey_id(message["program_id"], _db)[0]
         class_uuids = _murfey_id(message["program_id"], _db, number=4)