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lines changed Original file line number Diff line number Diff line change @@ -99,6 +99,7 @@ murfey = "murfey.client:run"
9999"murfey_machine" = " murfey.util.config:get_extended_machine_config"
100100[project .entry-points ."murfey .workflows" ]
101101"clem.align_and_merge" = " murfey.workflows.clem.align_and_merge:submit_cluster_request"
102+ "clem.register_align_and_merge_result" = " murfey.workflows.clem.register_align_and_merge_results:register_align_and_merge_result"
102103"process_raw_lifs" = " murfey.workflows.clem.process_raw_lifs:zocalo_cluster_request"
103104"process_raw_tiffs" = " murfey.workflows.clem.process_raw_tiffs:zocalo_cluster_request"
104105"register_lif_preprocessing_result" = " murfey.workflows.clem.register_preprocessing_results:register_lif_preprocessing_result"
Original file line number Diff line number Diff line change 1+ from __future__ import annotations
2+
3+ import logging
4+ from pathlib import Path
5+ from typing import Optional
6+
7+ from pydantic import BaseModel
8+
9+ logger = logging .getLogger ("murfey.workflows.clem.register_align_and_merge_results" )
10+
11+
12+ class AlignAndMergeResult (BaseModel ):
13+ series_name : str
14+ image_stacks : list [Path ]
15+ align_self : Optional [str ] = None
16+ flatten : Optional [str ] = "mean"
17+ align_across : Optional [str ] = None
18+ composite_image : Path
19+
20+
21+ def register_align_and_merge_result ():
22+ return True
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