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Added Helm charts to deploy Murfey's components on a Kubernetes cluster
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‎Helm/Chart.yaml‎

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apiVersion: v1
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name: murfey-services
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description: Umbrella Helm chart for deploying the servers and daemons needed to enable Murfey to transfer and process data
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version: 0.16.9
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dependencies:
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- name: murfey-instrument-server-clem
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- name: murfey-server
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- name: murfey-rsync

‎Helm/charts/murfey-instrument-server-clem/Chart.yaml‎

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apiVersion: v1
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name: murfey-instrument-server-clem
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description: Helm chart for deploying a Murfey instrument server, which executes orders to detect, modify, and transfer files on the instrument PC, and notifies the backend server about transferred files
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version: 0.16.9

‎Helm/charts/murfey-instrument-server-clem/templates/deployment.yaml‎

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apiVersion: v1
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kind: Service
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metadata:
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name: {{ .Values.appName }}
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namespace: {{ .Values.global.namespace }}
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labels:
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app: {{ .Values.appName }}
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spec:
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type: LoadBalancer
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externalTrafficPolicy: Cluster
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ports:
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{{- toYaml .Values.servicePorts | nindent 2 }}
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selector:
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app: {{ .Values.appName }}
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---
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apiVersion: apps/v1
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kind: Deployment
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metadata:
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name: {{ .Values.appName }}
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namespace: {{ .Values.global.namespace }}
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labels:
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app: {{ .Values.appName }}
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spec:
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replicas: {{ .Values.replicas }}
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selector:
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matchLabels:
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app: {{ .Values.appName }}
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template:
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metadata:
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labels:
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app: {{ .Values.appName }}
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spec:
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securityContext:
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runAsUser: {{ .Values.global.runAsUser }}
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runAsGroup: {{ .Values.global.runAsGroup }}
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volumes:
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# Mount config files from secrets
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- name: murfey-client-config
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secret:
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secretName: {{ .Values.global.murfeyClientConfigCLEMSecretName }}
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items:
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- key: {{ .Values.global.murfeyClientConfigCLEMFileName }}
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path: .murfey
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# Mount data directories
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{{- toYaml .Values.extraVolumes | nindent 8 }}
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containers:
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- name: {{ .Values.appName }}
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image: {{ .Values.image }}
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imagePullPolicy: Always
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securityContext:
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privileged: false
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volumeMounts:
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# Mount Murfey client config
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- name: murfey-client-config
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mountPath: /murfey/config/.murfey
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subPath: .murfey
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readOnly: false
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# Mount data directories
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{{- toYaml .Values.extraVolumeMounts | nindent 12 }}
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env:
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- name: MURFEY_CLIENT_CONFIG_HOME
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value: "/tmp"
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ports:
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- containerPort: {{ .Values.containerPort }}
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command:
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{{- toYaml .Values.command | nindent 12 }}
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args:
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{{- toYaml .Values.args | nindent 12 }}

‎Helm/charts/murfey-rsync/Chart.yaml‎

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apiVersion: v1
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name: murfey-rsync
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description: Helm chart for deploying an rsync daemon, which is responsible for executing the transfer of files from the client storage directory to the server storage system
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version: 0.16.9

‎Helm/charts/murfey-rsync/templates/deployment.yaml‎

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apiVersion: v1
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kind: Service
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metadata:
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name: {{ .Values.appName }}
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spec:
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ports:
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{{- toYaml .Values.servicePorts | nindent 2 }}
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selector:
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app: {{ .Values.appName }}
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type: ClusterIP
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---
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apiVersion: apps/v1
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kind: Deployment
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metadata:
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name: {{ .Values.appName }}
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namespace: {{ .Values.global.namespace }}
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spec:
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replicas: 1
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selector:
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matchLabels:
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app: {{ .Values.appName }}
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template:
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metadata:
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labels:
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app: {{ .Values.appName }}
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spec:
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securityContext:
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runAsUser: {{ .Values.global.runAsUser }}
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runAsGroup: {{ .Values.global.runAsGroup }}
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volumes:
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- name: rsyncd-conf
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secret:
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secretName: {{ .Values.global.rsyncConfigSecretName }}
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items:
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- key: {{ .Values.global.rsyncConfigFileName }}
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path: rsyncd.conf
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# Mount data directories
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{{- toYaml .Values.extraVolumes | nindent 8 }}
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containers:
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- name: {{ .Values.appName }}
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image: {{ .Values.image }}
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imagePullPolicy: Always
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resources:
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requests:
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cpu: {{ .Values.cpuRequest }}
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limits:
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cpu: {{ .Values.cpuLimit }}
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memory: {{ .Values.memoryLimit }}
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volumeMounts:
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# Mount rsync config files
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- name: rsyncd-conf
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mountPath: /murfey/rsync/rsyncd.conf
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subPath: rsyncd.conf
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readOnly: true
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# Mount data directories
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{{- toYaml .Values.extraVolumeMounts | nindent 12 }}
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ports:
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- containerPort: {{ .Values.containerPort }}
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command:
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{{- toYaml .Values.command | nindent 12 }}
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args:
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{{- toYaml .Values.args | nindent 12 }}

‎Helm/charts/murfey-server/Chart.yaml‎

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apiVersion: v1
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name: murfey-server
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description: Helm chart for deploying a Murfey backend server, which is responsible for orchestrating the data transfer and processing workflow between the client PC and the storage system
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version: 0.16.9

‎Helm/charts/murfey-server/templates/deployment.yaml‎

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apiVersion: v1
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kind: Service
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metadata:
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name: {{ .Values.appName }}
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namespace: {{ .Values.global.namespace }}
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labels:
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app: {{ .Values.appName }}
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spec:
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type: LoadBalancer
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externalTrafficPolicy: Cluster
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ports:
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{{- toYaml .Values.servicePorts | nindent 2 }}
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selector:
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app: {{ .Values.appName }}
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---
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apiVersion: apps/v1
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kind: Deployment
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metadata:
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name: {{ .Values.appName }}
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namespace: {{ .Values.global.namespace }}
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labels:
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app: {{ .Values.appName }}
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spec:
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replicas: {{ .Values.replicas }}
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selector:
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matchLabels:
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app: {{ .Values.appName }}
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template:
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metadata:
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labels:
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app: {{ .Values.appName }}
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spec:
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securityContext:
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runAsUser: {{ .Values.global.runAsUser }}
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runAsGroup: {{ .Values.global.runAsGroup }}
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volumes:
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# Mount config files from secrets
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- name: secrets
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projected:
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sources:
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- secret:
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name: {{ .Values.global.murfeyMachineConfigSecretName }}
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- secret:
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name: {{ .Values.global.murfeySecurityConfigSecretName }}
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- secret:
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name: {{ .Values.global.ispybSecretName }}
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- secret:
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name: {{ .Values.global.murfeyDBSecretName }}
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- secret:
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name: {{ .Values.global.rmqSecretName }}
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# Mount data directories
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{{- toYaml .Values.extraVolumes | nindent 8 }}
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containers:
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- name: {{ .Values.appName }}
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image: {{ .Values.image }}
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imagePullPolicy: Always
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securityContext:
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privileged: false
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volumeMounts:
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# Mount config files
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- name: secrets
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mountPath: /murfey/config
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readOnly: true
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# Mount data directories
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{{- toYaml .Values.extraVolumeMounts | nindent 12 }}
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env:
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- name: MURFEY_MACHINE_CONFIGURATION
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value: "/murfey/config/{{ .Values.global.murfeyMachineConfigFileName }}"
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- name: MURFEY_SECURITY_CONFIGURATION
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value: "/murfey/config/{{ .Values.global.murfeySecurityConfigFileName }}"
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- name: ISPYB_CREDENTIALS
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value: "/murfey/config/{{ .Values.global.ispybFileName }}"
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ports:
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- containerPort: {{ .Values.containerPort }}
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command:
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{{- toYaml .Values.command | nindent 12 }}
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args:
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{{- toYaml .Values.args | nindent 12 }}

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