Added logs to keep track of atlas image conversion workflow

Author: tieneupin

src/murfey/client/contexts/atlas.py

@@ -47,3 +47,6 @@ def post_transfer(
                     f"{str(environment.url.geturl())}{url_path_for('session_control.spa_router', 'make_atlas_jpg', session_id=environment.murfey_session)}",
                     json={"path": str(transferred_atlas_name)},
                 )
+                logger.info(
+                    f"Submitted request to create JPG image of atlas {str(transferred_atlas_name)!r}"
+                )

src/murfey/server/api/session_control.py

@@ -352,6 +352,7 @@ def get_foil_hole(
 def make_atlas_jpg(
     session_id: MurfeySessionID, atlas_mrc: StringOfPathModel, db=murfey_db
 ):
+    logger.debug(f"Received request to create JPG image of atlas {atlas_mrc.path!r}")
     session = db.exec(select(Session).where(Session.id == session_id)).one()
     return atlas_jpg_from_mrc(
         session.instrument_name, session.visit, Path(atlas_mrc.path)

src/murfey/workflows/spa/atlas.py

@@ -1,3 +1,4 @@
+import logging
 from pathlib import Path
 
 import mrcfile
@@ -6,8 +7,11 @@
 
 from murfey.util.config import get_machine_config
 
+logger = logging.getLogger("murfey.workflows.spa.atlas")
+
 
 def atlas_jpg_from_mrc(instrument_name: str, visit_name: str, atlas_mrc: Path):
+    logger.debug(f"Starting workflow to create JPG image of atlas {atlas_mrc}")
     with mrcfile.read(atlas_mrc) as mrc:
         data = mrc.data
 
@@ -33,3 +37,4 @@ def atlas_jpg_from_mrc(instrument_name: str, visit_name: str, atlas_mrc: Path):
 
     im = PIL.Image.fromarray(data)
     im.convert(mode="L").save(atlas_jpg_file)
+    logger.debug(f"JPG image of atlas saved as {atlas_jpg_file}")