Dependency Dashboard

[renovate]

This issue lists Renovate updates and detected dependencies. Read the Dependency Dashboard docs to learn more.
View this repository on the Mend.io Web Portal.

Config Migration Needed

• Select this checkbox to let Renovate create an automated Config Migration PR.

Pending Approval

The following branches are pending approval. To create them, click on a checkbox below.

• Update pypa/gh-action-pypi-publish digest to 03f86fe
• Update codecov/codecov-action action to v3.1.6
• Update all dependencies (Pint, dask, h5py, hdf5plugin, netcdf4, nexgen, numcodecs, numpy, pandas, pytest, sparse, tqdm, xarray, zarr)
• Update all pre-commit hooks (asottile/pyupgrade, astral-sh/ruff-pre-commit, macisamuele/language-formatters-pre-commit-hooks)
• Update dependency python to 3.14
• Update pavelzw/pytest-action action to v2.2.0
• Update actions/checkout action to v6
• Update actions/setup-python action to v6
• Update all dependencies (major) (dask, hdf5plugin, pytest, sphinx_rtd_theme, xarray, zarr)
• Update codecov/codecov-action action to v5
• Update GitHub Artifact Actions (major) (actions/download-artifact, actions/upload-artifact)
• Update pre-commit hook pre-commit/pre-commit-hooks to v6
• 🔐 Create all pending approval PRs at once 🔐

Open

The following updates have all been created. To force a retry/rebase of any, click on a checkbox below.

• Update dependency setuptools to v78 [SECURITY]

Detected Dependencies

github-actions (1)

.github/workflows/build-and-test.yml (11)

• actions/checkout v3 → [Updates: v6]
• actions/setup-python v4 → [Updates: v6]
• actions/upload-artifact v3 → [Updates: v6]
• actions/checkout v3 → [Updates: v6]
• actions/download-artifact v3 → [Updates: v7]
• actions/setup-python v4 → [Updates: v6]
• pavelzw/pytest-action v2.1.3@b09a85cd1831cbaae76125fcae4a1e4b137ef026 → [Updates: v2.2.0]
• codecov/codecov-action v3.1.4@eaaf4bedf32dbdc6b720b63067d99c4d77d6047d → [Updates: v3.1.6, v5.5.2]
• actions/download-artifact v3 → [Updates: v7]
• pypa/gh-action-pypi-publish b7f401de30cb6434a1e19f805ff006643653240e → [Updates: undefined]
• python 3.11 → [Updates: 3.14]

pip_requirements (3)

requirements_dev.txt (15)

• dask ==2024.8.2 → [Updates: ==2024.12.1, ==2025.12.0]
• h5py ==3.11.0 → [Updates: ==3.15.1]
• hdf5plugin ==5.0.0 → [Updates: ==5.1.0, ==6.0.0]
• netcdf4 ==1.7.1 → [Updates: ==1.7.4]
• nexgen ==0.9.6 → [Updates: ==0.11.2]
• numcodecs ==0.13.0 → [Updates: ==0.16.5]
• numpy ==2.0.2 → [Updates: ==2.4.0]
• pandas ==2.2.2 → [Updates: ==2.3.3]
• Pint ==0.24.3 → [Updates: ==0.25.2]
• pytest ==8.3.3 → [Updates: ==8.4.2, ==9.0.2]
• setuptools ==73.0.1 → [Updates: ==78.1.1]
• sparse ==0.15.4 → [Updates: ==0.17.0]
• tqdm ==4.66.5 → [Updates: ==4.67.1]
• xarray ==2024.9.0 → [Updates: ==2024.11.0, ==2025.12.0]
• zarr ==2.18.3 → [Updates: ==2.18.7, ==3.1.5]

requirements_doc.txt (15)

• dask ==2024.8.2 → [Updates: ==2024.12.1, ==2025.12.0]
• h5py ==3.11.0 → [Updates: ==3.15.1]
• hdf5plugin ==5.0.0 → [Updates: ==5.1.0, ==6.0.0]
• netcdf4 ==1.7.1 → [Updates: ==1.7.4]
• nexgen ==0.9.6 → [Updates: ==0.11.2]
• numcodecs ==0.13.0 → [Updates: ==0.16.5]
• numpy ==2.0.2 → [Updates: ==2.4.0]
• pandas ==2.2.2 → [Updates: ==2.3.3]
• Pint ==0.24.3 → [Updates: ==0.25.2]
• setuptools ==73.0.1 → [Updates: ==78.1.1]
• sparse ==0.15.4 → [Updates: ==0.17.0]
• sphinx_rtd_theme ==2.0.0 → [Updates: ==3.0.2]
• tqdm ==4.66.5 → [Updates: ==4.67.1]
• xarray ==2024.9.0 → [Updates: ==2024.11.0, ==2025.12.0]
• zarr ==2.18.3 → [Updates: ==2.18.7, ==3.1.5]

requirements.txt (14)

• dask ==2024.8.2 → [Updates: ==2024.12.1, ==2025.12.0]
• h5py ==3.11.0 → [Updates: ==3.15.1]
• hdf5plugin ==5.0.0 → [Updates: ==5.1.0, ==6.0.0]
• netcdf4 ==1.7.1 → [Updates: ==1.7.4]
• nexgen ==0.9.6 → [Updates: ==0.11.2]
• numcodecs ==0.13.0 → [Updates: ==0.16.5]
• numpy ==2.0.2 → [Updates: ==2.4.0]
• pandas ==2.2.2 → [Updates: ==2.3.3]
• Pint ==0.24.3 → [Updates: ==0.25.2]
• setuptools ==73.0.1 → [Updates: ==78.1.1]
• sparse ==0.15.4 → [Updates: ==0.17.0]
• tqdm ==4.66.5 → [Updates: ==4.67.1]
• xarray ==2024.9.0 → [Updates: ==2024.11.0, ==2025.12.0]
• zarr ==2.18.3 → [Updates: ==2.18.7, ==3.1.5]

poetry (1)

pyproject.toml (4)

• dask !=2021.3.*
• h5py >=3.8
• hdf5plugin >=4.0.1
• nexgen >=0.9.3

pre-commit (1)

.pre-commit-config.yaml (4)

• asottile/pyupgrade v3.17.0 → [Updates: v3.21.2]
• astral-sh/ruff-pre-commit v0.6.2 → [Updates: v0.14.10]
• macisamuele/language-formatters-pre-commit-hooks v2.14.0 → [Updates: v2.15.0]
• pre-commit/pre-commit-hooks v4.6.0 → [Updates: v6.0.0]

---

• Check this box to trigger a request for Renovate to run again on this repository