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docs: add comprehensive documentation and CI/CD for smartem-workspace PyPI release
Add complete documentation suite and GitHub Actions workflow for publishing smartem-workspace to PyPI: Documentation: - User guide (docs/how-to/setup-smartem-workspace.md) - 600+ lines Comprehensive guide for end users covering installation, presets, configuration options, troubleshooting, and post-setup steps - Developer guide (packages/smartem-workspace/docs/developer-guide.md) - 3000+ lines In-depth technical documentation covering architecture, package structure, core components, configuration system, development setup, testing strategy, CI/CD pipeline, contributing guidelines, and API reference - PyPI setup guide (packages/smartem-workspace/docs/pypi-setup.md) - 800+ lines Step-by-step instructions for maintainers to set up PyPI accounts, generate API tokens, configure GitHub Secrets, and handle token rotation with security best practices CI/CD Infrastructure: - GitHub Actions workflow (.github/workflows/publish-smartem-workspace.yml) 6 jobs: test, lint, build, version-bump, publish-testpypi, publish-pypi Features: - Change detection (only runs on package changes) - Automated version bumping with commitizen - TestPyPI publish on main branch pushes - PyPI publish on release tags (smartem-workspace-v*) - Codecov integration for coverage reporting - Package metadata validation README Updates: - Enhanced package README with PyPI badges, documentation links, and development instructions - Updated root README with smartem-workspace quick start section Ready for PyPI publication once organizational PyPI account is created and tokens are configured in GitHub Secrets. Completes documentation and CI/CD setup for PR #17.
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‎.github/workflows/publish-smartem-workspace.yml‎

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name: Publish smartem-workspace to PyPI
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on:
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push:
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branches: [main]
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paths:
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- 'packages/smartem-workspace/**'
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- '.github/workflows/publish-smartem-workspace.yml'
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pull_request:
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paths:
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- 'packages/smartem-workspace/**'
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- '.github/workflows/publish-smartem-workspace.yml'
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release:
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types: [published]
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workflow_dispatch:
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permissions:
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contents: write
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id-token: write
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jobs:
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test:
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name: Test smartem-workspace
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runs-on: ubuntu-latest
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defaults:
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run:
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working-directory: packages/smartem-workspace
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steps:
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- name: Checkout repository
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uses: actions/checkout@v6
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- name: Install uv
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uses: astral-sh/setup-uv@v5
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- name: Set up Python
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run: uv python install 3.11
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- name: Install dependencies
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run: uv sync --all-extras
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- name: Run tests
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run: uv run pytest -v --cov=smartem_workspace --cov-report=xml --cov-report=term
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- name: Upload coverage to Codecov
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uses: codecov/codecov-action@v5
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with:
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files: ./packages/smartem-workspace/coverage.xml
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flags: smartem-workspace
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name: smartem-workspace-coverage
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fail_ci_if_error: false
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lint:
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name: Lint smartem-workspace
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runs-on: ubuntu-latest
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defaults:
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run:
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working-directory: packages/smartem-workspace
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steps:
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- name: Checkout repository
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uses: actions/checkout@v6
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- name: Install uv
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uses: astral-sh/setup-uv@v5
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- name: Set up Python
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run: uv python install 3.11
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- name: Install dependencies
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run: uv sync --all-extras
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- name: Ruff check
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run: uv run ruff check .
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- name: Ruff format check
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run: uv run ruff format --check .
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build:
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name: Build smartem-workspace package
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runs-on: ubuntu-latest
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needs: [test, lint]
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defaults:
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run:
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working-directory: packages/smartem-workspace
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steps:
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- name: Checkout repository
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uses: actions/checkout@v6
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with:
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fetch-depth: 0
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- name: Install uv
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uses: astral-sh/setup-uv@v5
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- name: Set up Python
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run: uv python install 3.11
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- name: Build package
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run: uv build
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- name: Check package metadata
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run: |
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uv pip install twine
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twine check dist/*
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- name: List build artifacts
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run: ls -lh dist/
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- name: Upload build artifacts
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uses: actions/upload-artifact@v4
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with:
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name: dist
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path: packages/smartem-workspace/dist/*
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retention-days: 7
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version-bump:
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name: Bump version with commitizen
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runs-on: ubuntu-latest
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needs: [test, lint]
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if: github.event_name == 'push' && github.ref == 'refs/heads/main'
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defaults:
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run:
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working-directory: packages/smartem-workspace
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steps:
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- name: Checkout repository
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uses: actions/checkout@v6
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with:
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fetch-depth: 0
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token: ${{ secrets.GITHUB_TOKEN }}
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- name: Install uv
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uses: astral-sh/setup-uv@v5
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- name: Set up Python
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run: uv python install 3.11
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- name: Install commitizen
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run: uv pip install commitizen
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- name: Configure git
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run: |
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git config user.name "github-actions[bot]"
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git config user.email "github-actions[bot]@users.noreply.github.com"
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- name: Bump version
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id: bump
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run: |
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echo "Attempting version bump..."
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cz bump --yes || echo "No version bump needed"
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NEW_VERSION=$(uv run python -c "import smartem_workspace; print(smartem_workspace.__version__)")
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echo "new_version=$NEW_VERSION" >> $GITHUB_OUTPUT
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echo "Version: $NEW_VERSION"
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- name: Push changes
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if: steps.bump.outputs.new_version != ''
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run: |
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git push --follow-tags
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echo "Pushed version bump: ${{ steps.bump.outputs.new_version }}"
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publish-testpypi:
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name: Publish to TestPyPI
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runs-on: ubuntu-latest
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needs: [build, version-bump]
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if: github.event_name == 'push' && github.ref == 'refs/heads/main'
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environment:
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name: testpypi
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url: https://test.pypi.org/p/smartem-workspace
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steps:
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- name: Download build artifacts
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uses: actions/download-artifact@v4
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with:
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name: dist
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path: dist/
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- name: Install uv
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uses: astral-sh/setup-uv@v5
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- name: Install twine
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run: uv pip install twine
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- name: Publish to TestPyPI
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env:
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TWINE_USERNAME: __token__
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TWINE_PASSWORD: ${{ secrets.TEST_PYPI_API_TOKEN }}
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run: |
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echo "Publishing to TestPyPI..."
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twine upload --repository testpypi dist/* --verbose
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- name: Verify TestPyPI upload
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run: |
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echo "Package published to TestPyPI"
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echo "View at: https://test.pypi.org/project/smartem-workspace/"
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publish-pypi:
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name: Publish to PyPI
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runs-on: ubuntu-latest
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needs: [build]
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if: github.event_name == 'release' && startsWith(github.ref, 'refs/tags/smartem-workspace-v')
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environment:
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name: pypi
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url: https://pypi.org/p/smartem-workspace
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permissions:
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id-token: write
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steps:
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- name: Download build artifacts
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uses: actions/download-artifact@v4
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with:
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name: dist
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path: dist/
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- name: Install uv
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uses: astral-sh/setup-uv@v5
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- name: Install twine
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run: uv pip install twine
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- name: Publish to PyPI
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env:
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TWINE_USERNAME: __token__
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TWINE_PASSWORD: ${{ secrets.PYPI_API_TOKEN }}
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run: |
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echo "Publishing to PyPI..."
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twine upload dist/* --verbose
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- name: Wait for PyPI propagation
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run: |
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echo "Waiting 60 seconds for PyPI to propagate..."
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sleep 60
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- name: Verify PyPI installation
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run: |
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echo "Testing installation from PyPI..."
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uvx smartem-workspace --version || echo "Installation verification skipped (package may need more time to propagate)"
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- name: Output success message
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run: |
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echo "✓ Package published to PyPI"
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echo "View at: https://pypi.org/project/smartem-workspace/"
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echo "Install with: uvx smartem-workspace"

‎README.md‎

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## Quick Start
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### smartem-workspace CLI
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Automated workspace setup for SmartEM development:
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```bash
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# Set up complete development environment
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uvx smartem-workspace init --preset smartem-core
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# Or just this repository and docs
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uvx smartem-workspace init --preset minimal
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```
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See [smartem-workspace documentation](packages/smartem-workspace/README.md) for details.
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### Developer WebUI
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```bash

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