devops for mysql

David Erb · David Erb · commit 518759031e8a · 2023-05-26T11:35:04.000+01:00
diff --git a/.dae-devops/Makefile b/.dae-devops/Makefile
@@ -1,5 +1,5 @@
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name xchembku
 
 # ---------------------------------------------------------------------
@@ -69,4 +69,4 @@ publish_docs:
 	cp -r build/html/* $(DOCS_PUBLISH_ROOT)
 	
 
-# dae_devops_fingerprint e3ffdbe1b94d79346b694772741b1590
+# dae_devops_fingerprint d50edec1acad9cc9284a1ec9e21055a4
diff --git a/.dae-devops/docs/conventions.rst b/.dae-devops/docs/conventions.rst
@@ -1,5 +1,5 @@
 .. # ********** Please don't edit this file!
-.. # ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+.. # ********** It has been generated automatically by dae_devops version 0.5.3.
 .. # ********** For repository_name xchembku
 
 Naming conventions
@@ -31,4 +31,4 @@ repository
     lowercase, hyphens
 
 
-.. # dae_devops_fingerprint 61ff8794aaf620fd538ce82a508c2a00
+.. # dae_devops_fingerprint 6447195a860d723dc42fcf539bc98512
diff --git a/.dae-devops/docs/developing.rst b/.dae-devops/docs/developing.rst
@@ -1,5 +1,5 @@
 .. # ********** Please don't edit this file!
-.. # ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+.. # ********** It has been generated automatically by dae_devops version 0.5.3.
 .. # ********** For repository_name xchembku
 
 Developing
@@ -35,4 +35,4 @@ If you plan to modify the docs, you will need to::
     
 
 
-.. # dae_devops_fingerprint d4f601d3c2e19339eb17e18158851a5f
+.. # dae_devops_fingerprint b8e50fbfb03247dcba32527a1bce43ac
diff --git a/.dae-devops/docs/devops.rst b/.dae-devops/docs/devops.rst
@@ -1,5 +1,5 @@
 .. # ********** Please don't edit this file!
-.. # ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+.. # ********** It has been generated automatically by dae_devops version 0.5.3.
 .. # ********** For repository_name xchembku
 
 Devops
@@ -44,4 +44,4 @@ Publishing (for the Diamond intranet)::
     
 The Diamond intranet commands are not used for production. The production packaging and publishing are handled in the GitHub Actions workflows mechanism.
 
-.. # dae_devops_fingerprint 8ee660812b0809fcdb3bebce2f40935b
+.. # dae_devops_fingerprint ba8ae1a6737f996ecbb36c9b8517feeb
diff --git a/.dae-devops/docs/docs_structure.rst b/.dae-devops/docs/docs_structure.rst
@@ -1,5 +1,5 @@
 .. # ********** Please don't edit this file!
-.. # ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+.. # ********** It has been generated automatically by dae_devops version 0.5.3.
 .. # ********** For repository_name xchembku
 
 About the documentation
@@ -21,4 +21,4 @@ improve most documentation - often immensely.
 
 `More information on this topic. <https://documentation.divio.com>`_
 
-.. # dae_devops_fingerprint f8b53e0fdfbcfe9860abf7b8a05f5098
+.. # dae_devops_fingerprint 0de874316fdf8efc0589e4ad7854a880
diff --git a/.dae-devops/docs/installing.rst b/.dae-devops/docs/installing.rst
@@ -1,5 +1,5 @@
 .. # ********** Please don't edit this file!
-.. # ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+.. # ********** It has been generated automatically by dae_devops version 0.5.3.
 .. # ********** For repository_name xchembku
 
 Installing
@@ -39,4 +39,4 @@ You can check the version that has been installed by typing::
     $ xchembku --version
     $ xchembku --version-json
 
-.. # dae_devops_fingerprint ab5df2cdbbfd6dc0b711fed060a6020a
+.. # dae_devops_fingerprint b0dd26d8e2897f65f63f81a16b0a8e29
diff --git a/.dae-devops/docs/testing.rst b/.dae-devops/docs/testing.rst
@@ -1,5 +1,5 @@
 .. # ********** Please don't edit this file!
-.. # ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+.. # ********** It has been generated automatically by dae_devops version 0.5.3.
 .. # ********** For repository_name xchembku
 
 Testing
@@ -31,4 +31,4 @@ This allows peeking in there to see what's been written by the test.
     
 
 
-.. # dae_devops_fingerprint da9c936d90c8fe12576ef5d4b81f2df2
+.. # dae_devops_fingerprint a8eba26c733cc75e40ad8560dd959093
diff --git a/.dae-devops/prepare_git_dependencies.sh b/.dae-devops/prepare_git_dependencies.sh
@@ -1,7 +1,7 @@
 #!/usr/bin/env bash
 
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name xchembku
 
 me=${BASH_SOURCE}
@@ -13,4 +13,4 @@ function __install {
 }
 
 
-# dae_devops_fingerprint 471437c13f5cc6b7ecba7fe8dbd255fe
+# dae_devops_fingerprint cdcebae8370f946f1019eef0a0831482
diff --git a/.devcontainer/Dockerfile b/.devcontainer/Dockerfile
@@ -1,5 +1,5 @@
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name xchembku
 
 # This file is for use as a devcontainer and a runtime container
@@ -40,4 +40,4 @@ ENV PATH=/venv/bin:$PATH
 ENTRYPOINT ["xchembku"]
 CMD ["--version"]
 
-# dae_devops_fingerprint 83dced5eb06d09ece1657b21459df095
+# dae_devops_fingerprint fd736af440d48fe8edef479361032684
diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json
@@ -1,5 +1,5 @@
 // ********** Please don't edit this file!
-// ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+// ********** It has been generated automatically by dae_devops version 0.5.3.
 // ********** For repository_name xchembku
 
 // For format details, see https://containers.dev/implementors/json_reference/
@@ -57,4 +57,4 @@
     "postCreateCommand": "pip install -e .[dev]"
 }
 
-// dae_devops_fingerprint 91fc8e63aface50b39c4ccf05735df3d
+// dae_devops_fingerprint 78ef5033030dfea0efccf90dd390ef9e
diff --git a/.github/CONTRIBUTING.rst b/.github/CONTRIBUTING.rst
@@ -1,5 +1,5 @@
 .. # ********** Please don't edit this file!
-.. # ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+.. # ********** It has been generated automatically by dae_devops version 0.5.3.
 .. # ********** For repository_name xchembku
 
 Contributing to the project
@@ -38,4 +38,4 @@ should follow.
 
 .. _Developer Guide: https://diamondlightsource.github.io/xchembku/main/developer/how-to/contribute.html
 
-.. # dae_devops_fingerprint 8285e74c1df9177847297f3a9cba16a5
+.. # dae_devops_fingerprint 4d117034a5fff6afaa2d35bb72fc9eac
diff --git a/.github/actions/install_requirements/action.yml b/.github/actions/install_requirements/action.yml
@@ -1,5 +1,5 @@
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name xchembku
 
 name: Install requirements
@@ -61,4 +61,4 @@ runs:
       shell: bash
 
 
-# dae_devops_fingerprint 296af4a497ec4893f275d79a16beb7f2
+# dae_devops_fingerprint 69141e6f06c677380aef16787df9b99c
diff --git a/.github/dependabot.yml b/.github/dependabot.yml
@@ -1,5 +1,5 @@
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name xchembku
 
 # To get started with Dependabot version updates, you'll need to specify which
@@ -19,4 +19,4 @@ updates:
     schedule:
       interval: "weekly"
 
-# dae_devops_fingerprint 386f5e9d098a00426dc6c035344d3feb
+# dae_devops_fingerprint cdf50e1871930e9030ec6b8a8bc08890
diff --git a/.github/pages/index.html b/.github/pages/index.html
@@ -1,5 +1,5 @@
 <!-- ********** Please don't edit this file! -->
-<!-- ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523. -->
+<!-- ********** It has been generated automatically by dae_devops version 0.5.3. -->
 <!-- ********** For repository_name xchembku -->
 
 <!DOCTYPE html>
@@ -14,4 +14,4 @@
 
 </html>
 
-<!-- dae_devops_fingerprint be2a6baf306272fe0239fed4e5ac4477 -->
+<!-- dae_devops_fingerprint 9f4441e736a1b4f740437648b710c7f9 -->
diff --git a/.github/pages/make_switcher.py b/.github/pages/make_switcher.py
@@ -1,5 +1,5 @@
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name xchembku
 
 import json
@@ -102,4 +102,4 @@ def main(args=None):
 if __name__ == "__main__":
     main()
 
-# dae_devops_fingerprint e10ff530e0244729965a701b60a42ef4
+# dae_devops_fingerprint 6d3e04401582f9d0c731b00a656299ab
diff --git a/.github/workflows/code.yml b/.github/workflows/code.yml
@@ -1,5 +1,5 @@
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name xchembku
 
 name: Code CI
@@ -39,7 +39,7 @@ jobs:
       fail-fast: false
       matrix:
         os: ["ubuntu-latest"] # can add windows-latest, macos-latest
-        python: ["3.10", "3.11"]
+        python: ["3.10"]
         install: ["-e .[dev,docs]"]
         # Make one version be non-editable to test both paths of version code
         include:
@@ -69,6 +69,10 @@ jobs:
       - name: List dependency tree
         run: pipdeptree
 
+      # TODO: Make startup of MySQL able to be configured.
+      - name: Start up the MySQL that comes with Unbuntu
+        run: sudo /etc/init.d/mysql start
+
       - name: Run tests
         run: |
           sudo apt install environment-modules
@@ -212,4 +216,4 @@ jobs:
         with:
           password: ${{ secrets.PYPI_TOKEN }}
 
-# dae_devops_fingerprint 24aafb1c3e983f3ba55722d130887117
+# dae_devops_fingerprint b95f4d599ba467ac167ad6ea2a446537
diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
@@ -1,5 +1,5 @@
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name xchembku
 
 name: Docs CI
@@ -56,4 +56,4 @@ jobs:
           publish_dir: .github/pages
           keep_files: true
 
-# dae_devops_fingerprint d2a2d4d98d34d56be3d5e8b937ccba5e
+# dae_devops_fingerprint 51b75f2f22704465096eb6a5556ef500
diff --git a/.github/workflows/docs_clean.yml b/.github/workflows/docs_clean.yml
@@ -1,5 +1,5 @@
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name xchembku
 
 name: Docs Cleanup CI
@@ -46,4 +46,4 @@ jobs:
           git commit -am "Removing redundant docs version $DOCS_VERSION"
           git push
 
-# dae_devops_fingerprint bab74394a4072d2f377652f223c8f281
+# dae_devops_fingerprint dc50d2f6b720ffa403975696c9411fee
diff --git a/.github/workflows/linkcheck.yml b/.github/workflows/linkcheck.yml
@@ -1,5 +1,5 @@
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name xchembku
 
 name: Link Check
@@ -27,4 +27,4 @@ jobs:
       - name: Check links
         run: tox -e docs build -- -b linkcheck
 
-# dae_devops_fingerprint e7a56bac956b6e3701baaedfa9176183
+# dae_devops_fingerprint c821fd9c8d43265b997cf10e689ed233
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
@@ -1,5 +1,5 @@
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name xchembku
 
 variables:
@@ -87,4 +87,4 @@ package_pip:
 #     # The validate_docs artifacts are in the build/html folder.
 #     - make -f .dae-devops/Makefile publish_docs
 
-# dae_devops_fingerprint 44bd32ca625f3c17a64b6e43b2ed84ff
+# dae_devops_fingerprint 3fd3717bf5ac6fc69f0e7e9e5e62f852
diff --git a/docs/_static/css/custom.css b/docs/_static/css/custom.css
@@ -1,5 +1,5 @@
 /* ********** Please don't edit this file! */ 
-/* ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523. */ 
+/* ********** It has been generated automatically by dae_devops version 0.5.3. */ 
 /* ********** For repository_name xchembku */ 
 
 /* The theme normally has this, but I think it's ok to use the full width of the window in all @media sizes.
@@ -15,4 +15,4 @@
     max-width: 100%;
 }
 
-/* dae_devops_fingerprint e1e58e5bce402e0019c6fbf4320d99c8 */ 
+/* dae_devops_fingerprint a59d7d0dbd8af26d05f2a740751249c3 */ 
diff --git a/docs/conf.py b/docs/conf.py
@@ -1,5 +1,5 @@
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name xchembku
 
 from pathlib import Path
@@ -197,4 +197,4 @@ def setup(app):
     app.connect("source-read", ultimateReplace)
 
 
-# dae_devops_fingerprint d15a2a52a301b1d3d629837be20585be
+# dae_devops_fingerprint 3e5f08df87ebb37ddf17572d476185a2
diff --git a/pyproject.toml b/pyproject.toml
@@ -1,5 +1,5 @@
 # ********** Please don't edit this file!
-# ********** It has been generated automatically by dae_devops version 0.5.3.dev1+g36e9e1c.d20230523.
+# ********** It has been generated automatically by dae_devops version 0.5.3.
 # ********** For repository_name xchembku
 
 [build-system]
@@ -103,4 +103,4 @@ source = ["src", "**/site-packages/"]
 [tool.tox]
 legacy_tox_ini = "[tox]\nskipsdist=True\n\n[testenv:{pre-commit,mypy,pytest,docs}]\n# Don't create a virtualenv for the command, requires tox-direct plugin\ndirect = True\npassenv = *\nallowlist_externals = \n    pytest \n    pre-commit\n    mypy\n    sphinx-build\n    sphinx-autobuild\ncommands =\n    pytest: pytest {posargs}\n    mypy: mypy src tests {posargs}\n    pre-commit: pre-commit run --all-files {posargs}\n    docs: sphinx-{posargs:build -EW --keep-going} -T docs build/html\n"
 
-# dae_devops_fingerprint 110f84e6ca35742abfc91e75e8f4895d
+# dae_devops_fingerprint c6a28d0d6afaffc18e6857fe4c60799f
