integration of dive-dsa-slicer repo (#219)

* integration of dive-dsa-slicer repo

* update github ci uses

* update readme

Author: BryonLewis

.github/workflows/CI.yml

@@ -17,9 +17,9 @@ jobs:
     runs-on: ubuntu-latest
     steps:
     -
-      uses: actions/checkout@v2
+      uses: actions/checkout@v3
     - 
-      uses: actions/setup-node@v2
+      uses: actions/setup-node@v3
       with:
         node-version: '20.10.0'
     -

.github/workflows/release-dive-dsa-slicer.yml

@@ -0,0 +1,28 @@
+name: NPM Publish DIVE-DSA-Slicer
+on:
+  workflow_dispatch: 
+  release:
+    types: [published]
+
+jobs:
+ build:
+    runs-on: ubuntu-latest
+    name: Publish Vue Girder SlicerCLI UI Client Library
+    defaults:
+      run:
+        working-directory: ./
+    steps:
+      - uses: actions/checkout@v3
+      # Setup .npmrc file to publish to npm
+      - uses: actions/setup-node@v3
+        with:
+          node-version: '20.x'
+          registry-url: 'https://registry.npmjs.org'
+      - run: npm install
+        working-directory: ./dive-dsa-slicer/vue-girder-slicer-ui  
+      - run: npm run build
+        working-directory: ./dive-dsa-slicer/vue-girder-slicer-ui
+      - run: npm publish
+        working-directory: ./dive-dsa-slicer/vue-girder-slicer-ui
+        env:
+          NODE_AUTH_TOKEN: ${{ secrets.NODE_AUTH_TOKEN }}

.github/workflows/release.yml .github/workflows/release-dive-dsa.yml.github/workflows/release.yml renamed to .github/workflows/release-dive-dsa.yml

@@ -1,4 +1,4 @@
-name: NPM Publish
+name: NPM Publish DIVE-DSA
 on:
   workflow_dispatch: 
   release:
@@ -21,4 +21,4 @@ jobs:
       - run: yarn build:web
       - run: yarn publish
         env:
-          NODE_AUTH_TOKEN: ${{ secrets.NODE_AUTH_TOKEN }}
+          NODE_AUTH_TOKEN: ${{ secrets.NODE_AUTH_TOKEN }}

.github/workflows/workflow-dive-dsa-slicer.yml

@@ -0,0 +1,31 @@
+name: Build DIVE-DSA-Slicer Docker Images
+on:
+  workflow_dispatch: 
+  push:
+    branches:
+      - main
+jobs:
+  publish:
+    name: Publish Docker Container
+    runs-on: ubuntu-latest
+    steps:
+      -
+        uses: actions/checkout@v3
+      -
+        name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v2
+      -
+        name: Login to GitHub Container Registry
+        uses: docker/login-action@v2
+        with:
+          registry: ghcr.io
+          username: ${{ github.actor }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+      -
+        name: Build and push web
+        uses: docker/build-push-action@v3
+        with:
+          context: ./dive-dsa-slicer
+          file: example-docker-containers/Dockerfile
+          tags: ghcr.io/DigitalSlideArchive/dive-dsa/dive-dsa-slicer-examples:latest
+          push: true

.github/workflows/workflow.yml .github/workflows/workflow-dive-dsa.yml.github/workflows/workflow.yml renamed to .github/workflows/workflow-dive-dsa.yml

@@ -27,15 +27,15 @@ jobs:
         with:
           context: .
           file: docker/girder.Dockerfile
-          tags: ghcr.io/DigitalSlideArchive/dive-dsa/dive-dsa-web:latest
+          tags: ghcr.io/digitalslidearchive/dive-dsa/dive-dsa-web:latest
           push: true
       -
         name: Build and push worker
         uses: docker/build-push-action@v3
         with:
           context: .
           file: docker/girder_worker.Dockerfile
-          tags: ghcr.io/DigitalSlideArchive/dive-dsa/dive-dsa-worker:latest
+          tags: ghcr.io/digitalslidearchive/dive-dsa/dive-dsa-worker:latest
           push: true
 
   docs:

README.md

@@ -1,8 +1,6 @@
-<img src="http://www.viametoolkit.org/wp-content/uploads/2016/08/viami_logo.png" alt="VIAME Logo" width="200" height="78">
-
 DIVE is a web interface for performing data management, video annotation, and running a portion of the algorithms stored within the [VIAME](https://github.com/VIAME/VIAME) repository. When compiled, docker instances for DIVE can be run either as local servers or online in web services. A sample instance of DIVE is running on a public server at [viame.kitware.com](https://viame.kitware.com).
 
-THis is a version of DIVE that integrates with [Digital Slide Archive](https://digitalslidearchive.github.io/digital_slide_archive/).  There are features and differences with the core DIVE functionality.  The DIVE-DSA user guide lists all new features and functionality.
+This is a version of DIVE that integrates with [Digital Slide Archive](https://digitalslidearchive.github.io/digital_slide_archive/).  There are features and differences with the core DIVE functionality.  The [DIVE-DSA user guide] (https://DigitalSlideArchive.github.io/dive-dsa/) lists all new features and functionality.
 
 ![docs/images/Banner.png](docs/images/Banner.png)
 

client/platform/web-girder/views/SlicerTaskRunner.vue

@@ -189,9 +189,9 @@ export default defineComponent({
         <v-card-text>
           <p>
             This is a beta version of providing a Slicer CLI task running interface inside of DIVE.  It will eventually be used inside of other DSA projects like volview and histomics.  Please underststand that this is a <b>Beta</b> version and will likely have some bugs.
-            Any bugs that are found please provide details in an issue (including a screenshot if possible) to: <a target="_blank" href="https://github.com/BryonLewis/dive-dsa-slicer/issues"> DIVE-DSA Github Isssue Page </a>
+            Any bugs that are found please provide details in an issue (including a screenshot if possible) to: <a target="_blank" href="https://github.com/DigitalSlideArchive/dive-dsa/issues"> DIVE-DSA Github Isssue Page </a>
           </p>
-          <p><a href="https://github.com/BryonLewis/dive-dsa-slicer/tree/main/small-docker" target="_blank">Sample DIVE Tasks</a></p>
+          <p><a href="https://github.com/DigitalSlideArchive/dive-dsa/tree/main/dive-dsa-slicer/example-docker-containers" target="_blank">Sample DIVE Tasks</a></p>
           <p>Sample tasks are on the Github Container Registry under the tag: <b>ghcr.io/bryonlewis/dive-dsa-slicer/dive-dsa-slicer:latest</b></p>
           <p>Below are some notes about it's operation</p>
           <ul style="list-style-type:disc;line-height: 2em;">