Python dependency installation error #12
Description
Warning messages:
1: In file.copy(savedcopy, lib, recursive = TRUE) :
problem copying C:\Users\ykh24\AppData\Local\R\win-library\4.2\00LOCK\stringi\libs\icudt69l.dat to
C:\Users\ykh24\AppData\Local\R\win-library\4.2\stringi\libs\icudt69l.dat: Invalid argument
2: In file.copy(savedcopy, lib, recursive = TRUE) :
problem copying C:\Users\ykh24\AppData\Local\R\win-library\4.2\00LOCK\stringi\libs\x64\stringi.dll to C:\Users\ykh24\AppData\Local\R\win-library\4.2\stringi\libs\x64\stringi.dll: Permission denied
3: In file.copy(savedcopy, lib, recursive = TRUE) :
problem copying C:\Users\ykh24\AppData\Local\R\win-library\4.2\00LOCK\cli\libs\x64\cli.dll to C:\Users\ykh24\AppData\Local\R\win-library\4.2\cli\libs\x64\cli.dll: Permission denied
4: In file.copy(savedcopy, lib, recursive = TRUE) :
problem copying C:\Users\ykh24\AppData\Local\R\win-library\4.2\00LOCK\fs\libs\x64\fs.dll to C:\Users\ykh24\AppData\Local\R\win-library\4.2\fs\libs\x64\fs.dll: Permission denied
5: In file.copy(savedcopy, lib, recursive = TRUE) :
problem copying C:\Users\ykh24\AppData\Local\R\win-library\4.2\00LOCK\cachem\libs\x64\cachem.dll to C:\Users\ykh24\AppData\Local\R\win-library\4.2\cachem\libs\x64\cachem.dll: Permission denied
6: In file.copy(savedcopy, lib, recursive = TRUE) :
problem copying C:\Users\ykh24\AppData\Local\R\win-library\4.2\00LOCK\fastmap\libs\x64\fastmap.dll to C:\Users\ykh24\AppData\Local\R\win-library\4.2\fastmap\libs\x64\fastmap.dll: Permission denied
7: In file.copy(savedcopy, lib, recursive = TRUE) :
problem copying C:\Users\ykh24\AppData\Local\R\win-library\4.2\00LOCK\curl\libs\x64\curl.dll to C:\Users\ykh24\AppData\Local\R\win-library\4.2\curl\libs\x64\curl.dll: Permission denied
Hi,
This warning message (above) appears after installing DO.utils.
There was nothing wrong with loading the DO.utils library.
It seemed to be going well, but there seemed to be a problem with installing the "adeft" packages, so I manually proceeded with setup.py and solved it.
The RStudio also outputs TRUE.
reticulate::configure_environment("DO.utils")
[1] TRUE
It seemed like the package problem was being solved, but... It doesn't work :(
extract_subtree(x, top_node, reload = FALSE)
List of 20
$ python : chr "C:/Users/ykh24/miniconda3/envs/myenv/python.exe"
$ libpython : chr "C:/Users/ykh24/miniconda3/envs/myenv/python39.dll"
$ pythonhome : chr "C:/Users/ykh24/miniconda3/envs/myenv"
$ pythonpath : chr "C:\\Users\\ykh24\\AppData\\Local\\R\\win-library\\4.2\\reticulate\\config;C:\\Users\\ykh24\\MINICO~1\\envs\\mye"| __truncated__
$ prefix : chr "C:\\Users\\ykh24\\MINICO~1\\envs\\myenv"
$ exec_prefix : chr "C:\\Users\\ykh24\\MINICO~1\\envs\\myenv"
$ base_exec_prefix : chr "C:\\Users\\ykh24\\MINICO~1\\envs\\myenv"
$ virtualenv : chr ""
$ virtualenv_activate : chr ""
$ version_string : chr "3.9.16 (main, Jan 11 2023, 16:16:36) [MSC v.1916 64 bit (AMD64)]"
$ version : chr "3.9"
$ architecture : chr "64bit"
$ anaconda : logi FALSE
$ conda : logi FALSE
$ numpy :List of 2
..$ path : chr "C:/Users/ykh24/miniconda3/envs/myenv/Lib/site-packages/numpy"
..$ version:Class 'numeric_version' hidden list of 1
.. ..$ : int [1:3] 1 23 5
$ required_module : chr "pyobo"
$ required_module_path: chr "C:\\Users\\ykh24\\MINICO~1\\envs\\myenv\\lib\\site-packages\\pyobo\\__init__.p"
$ available : logi TRUE
$ python_versions : chr "C:/Users/ykh24/miniconda3/envs/myenv/python.exe"
$ forced : chr "use_python function"
- attr(*, "class")= chr "py_config"
Error: Python module pyDOID was not found.
Detected Python configuration: