Update worsening readme.md

- corrected `is about` links to ontobee
- brought pre-message generation links to standard reflected in other vignettes (changed `...` formatting)
- corrected grammar error in preference data introduction paragraph (error carried forward from social loss, needs fixing. see Issue
- changed format of message template section to `message name`[link] format for increased readability with multiple message templates in the section

Author: mackgalante

vignettes/worsening_vignette/readme.md

@@ -1,6 +1,6 @@
 # Worsening Vignette
 ## Introduction
-This vignette delineates the process for creating precision feedback messages about a recipient's performance worsening month-over-month. These messages use the worsening causal pathway, which provides negative feedback that may motivate providers by delivering information about their recent performance falling below the past month's performance for a given metric. An example messages that uses the worsening pathway is "`Your performance dropped this month for the measure [measure name]`".
+This vignette delineates the process for creating precision feedback messages about a recipient's performance worsening month-over-month. These messages use the worsening causal pathway, which provides negative feedback that may motivate providers by delivering information about their recent performance falling below the past month's performance for a given metric. An example messages that uses the worsening pathway is "Your performance dropped this month for the measure [measure name]".
 
 This vignette also contains examples of data features and other entities that a precision feedback system uses to evaluate the potential success of a precision feedback message. An example of such an entity is a [peer average comparator <sub>(BP)</sub>](https://bioportal.bioontology.org/ontologies/PSDO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPSDO_0000126), which is defined in the [Performance Summary Display Ontology <sub>(GH)</sub>](https://github.com/Display-Lab/psdo) as an average representing the mean performance of a peer group.
 
@@ -34,7 +34,7 @@ Gaile, a resident anesthesiologist at Midwest Medicine, has the following perfor
 |Mar  |              93%|               96|          91|
 
 ## Preference data
-Preferences for precision feedback are elicited through a preference survey that providers can take. The preference survey produces a preference model for each provider that, with the provider's permission, is shared with MPOG to maintain. MPOG analyses preferences data that is shared to identify population-level preference segments. These are generates as preference profiles that can serve as a default preference model for an organization, or which can be selected by providers who do not take the preference survey, but who identify preferences that are close enough to their own in the settings menu for the precision feedback system.
+Preferences for precision feedback are elicited through a preference survey that providers can take. The preference survey produces a preference model for each provider that, with the provider's permission, is shared with MPOG to maintain. MPOG analyses preferences data that is shared to identify population-level preference segments. This generates preference profiles that can serve as a default preference model for an organization, or which can be selected by providers who do not take the preference survey, but who identify preferences that are close enough to their own in the settings menu for the precision feedback system.
 
 Fahad's preference data:
 
@@ -78,10 +78,10 @@ This pathway describes the influence of feedback interventions informing the rec
 There are two necessary preconditions for the success of feedback intervention using the worsening causal pathway. They are subdivided into informational and message preconditions, and are as follows:
 
 Information content preconditions:
-1. `Negative performance trend content` [<sub>(BP)</sub>](https://bioportal.bioontology.org/ontologies/PSDO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPSDO_0000100)
+1. [Negative performance trend content <sub>(BP)</sub>](https://bioportal.bioontology.org/ontologies/PSDO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPSDO_0000100)
 
 Message preconditions:
-1. `Negative performance trend set` [<sub>(BP)</sub>](https://bioportal.bioontology.org/ontologies/PSDO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPSDO_0000119)
+1. [Negative performance trend set <sub>(BP)</sub>](https://bioportal.bioontology.org/ontologies/PSDO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPSDO_0000119)
 
 ### Moderators
 Moderators are factors that inhibit or promote the influence of the feedback intervention on the recipient. The social gain causal pathway has the following moderators:
@@ -100,17 +100,17 @@ The expected outcome of a successful worsening pathway intervention is clinical
 ## Message templates
 Message templates represent a possible motivational message that a precision feedback system can send. There are two message templates that the precision feedback system can currently access for this vignette: 
 
-The **[getting worse <sub>(GH)</sub>](https://github.com/Display-Lab/knowledge-base/blob/main/message_templates/getting_worse.json) message** reads:
+The `Getting Worse`[ <sub>(GH)</sub>](https://github.com/Display-Lab/knowledge-base/blob/main/message_templates/getting_worse.json) message reads:
 > Your performance is getting worse this month for the measure [measure name].
 
-This message template `is about` [<sub>(BP)</sub>](https://bioportal.bioontology.org/ontologies/IAO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FIAO_0000136) the following data features:
+This message template `is about` [<sub>(OntoBee)</sub>](https://ontobee.org/ontology/IAO?iri=http://purl.obolibrary.org/obo/IAO_0000136) the following data features:
 1. `Negative performance trend set` [<sub>(BP)</sub>](https://bioportal.bioontology.org/ontologies/PSDO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPSDO_0000045) 
 2. Display format compatability: `Line Graph` [<sub>(BP)</sub>](https://bioportal.bioontology.org/ontologies/IAO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FIAO_0000573), `Bar Chart` [<sub>(BP)</sub>](https://bioportal.bioontology.org/ontologies/STATO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSTATO_0000166)
 
-The **[performance dropped <sub>(GH)</sub>](https://github.com/Display-Lab/knowledge-base/blob/main/message_templates/performance_dropped.json) message** reads:
+The `performance dropped`[<sub>(GH)</sub>](https://github.com/Display-Lab/knowledge-base/blob/main/message_templates/performance_dropped.json) message** reads:
 > Your performance dropped this month for the measure [measure name].
 
-This message template `is about` [<sub>(BP)</sub>](https://bioportal.bioontology.org/ontologies/IAO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FIAO_0000136) the following data features:
+This message template `is about` [<sub>(OntoBee)</sub>](https://ontobee.org/ontology/IAO?iri=http://purl.obolibrary.org/obo/IAO_0000136) the following data features:
 1. `Negative performance trend set` [<sub>(BP)</sub>](https://bioportal.bioontology.org/ontologies/PSDO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FPSDO_0000119) 
 2. Display format compatability: `Line Graph` [<sub>(BP)</sub>](https://bioportal.bioontology.org/ontologies/IAO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FIAO_0000573), `Bar Chart` [<sub>(BP)</sub>](https://bioportal.bioontology.org/ontologies/STATO?p=classes&conceptid=http%3A%2F%2Fpurl.obolibrary.org%2Fobo%2FSTATO_0000166)
 ## Software Pipeline (Precision Feedback Pipeline)