Fix relative paths per Josh's feedback

Author: anniegbryant

Generate_Figure2_visuals.ipynb

@@ -596,7 +596,7 @@
     "\n",
     "random.seed(1)\n",
     "\n",
-    "mm_adj = pandas.read_csv('../data/mm_adj.csv',header=0,index_col=0)\n",
+    "mm_adj = pandas.read_csv('data/mm_adj.csv',header=0,index_col=0)\n",
     "statnames = mm_adj.columns\n",
     "\n",
     "numpy.fill_diagonal(mm_adj.values,numpy.nan)\n",
@@ -622,7 +622,7 @@
     "clusters = hierarchy.fcluster(Z, threshold, criterion='distance')\n",
     "nclusters = numpy.unique(clusters).size\n",
     "\n",
-    "cm = numpy.genfromtxt('../data/cmap.csv', delimiter=',')\n",
+    "cm = numpy.genfromtxt('data/cmap.csv', delimiter=',')\n",
     "cmap = [matplotlib.colors.rgb2hex(c / 255 + (0,)) for c in cm]\n",
     "\n",
     "hierarchy.set_link_color_palette(cmap)"