metaViraVerse/modules.json at dev · EBI-Metagenomics/metaViraVerse · GitHub

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{
    "name": "EBI-Metagenomics/metaviraverse",
    "homePage": "https://github.com/EBI-Metagenomics/metaviraverse",
    "repos": {
        "git@github.com:EBI-Metagenomics/nf-modules.git": {
            "modules": {
                "ebi-metagenomics": {
                    "amrintegrator": {
                        "branch": "main",
                        "git_sha": "0cc2e0c357a04995f8b181d2385aacc89b547b77",
                        "installed_by": ["amr_annotation"]
                    },
                    "rgi/downloaddb": {
                        "branch": "main",
                        "git_sha": "0cc2e0c357a04995f8b181d2385aacc89b547b77",
                        "installed_by": ["amr_annotation"]
                    }
                }
            },
            "subworkflows": {
                "ebi-metagenomics": {
                    "amr_annotation": {
                        "branch": "main",
                        "git_sha": "794a1496b50fb634b933a71bfd5e3aaf4ad6f7d9",
                        "installed_by": ["subworkflows"]
                    }
                }
            }
        },
        "https://github.com/nf-core/modules.git": {
            "modules": {
                "nf-core": {
                    "amrfinderplus/run": {
                        "branch": "master",
                        "git_sha": "a621003186ea59091561005bce7ce5fd645c7f07",
                        "installed_by": ["amr_annotation"]
                    },
                    "amrfinderplus/update": {
                        "branch": "master",
                        "git_sha": "a621003186ea59091561005bce7ce5fd645c7f07",
                        "installed_by": ["amr_annotation"]
                    },
                    "barrnap": {
                        "branch": "master",
                        "git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
                        "installed_by": ["modules"]
                    },
                    "blast/blastn": {
                        "branch": "master",
                        "git_sha": "9da6f5cc5b9170943be764c0a6926e81ba1ed3b9",
                        "installed_by": ["modules"],
                        "patch": "modules/nf-core/blast/blastn/blast-blastn.diff"
                    },
                    "blast/makeblastdb": {
                        "branch": "master",
                        "git_sha": "6330227ba2a71d39f35b0ef60e381f456489c6ee",
                        "installed_by": ["modules"]
                    },
                    "custom/dumpsoftwareversions": {
                        "branch": "master",
                        "git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
                        "installed_by": ["modules"]
                    },
                    "deeparg/downloaddata": {
                        "branch": "master",
                        "git_sha": "7ee128aeeab26d51d33c8df0ef0238e971000025",
                        "installed_by": ["amr_annotation"]
                    },
                    "deeparg/predict": {
                        "branch": "master",
                        "git_sha": "7ee128aeeab26d51d33c8df0ef0238e971000025",
                        "installed_by": ["amr_annotation"]
                    },
                    "gunzip": {
                        "branch": "master",
                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                        "installed_by": ["modules"]
                    },
                    "hamronization/deeparg": {
                        "branch": "master",
                        "git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
                        "installed_by": ["amr_annotation"]
                    },
                    "hamronization/rgi": {
                        "branch": "master",
                        "git_sha": "5e748ff2b0f990949081c9e49792622eb3fe9ee9",
                        "installed_by": ["amr_annotation"]
                    },
                    "krona/ktimporttext": {
                        "branch": "master",
                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                        "installed_by": ["modules"]
                    },
                    "multiqc": {
                        "branch": "master",
                        "git_sha": "80cba9452fb1e9bb79884976fa1ca0e671949aa2",
                        "installed_by": ["modules"]
                    },
                    "rgi/cardannotation": {
                        "branch": "master",
                        "git_sha": "70c072e30155e7671be828762be16576bd4afca7",
                        "installed_by": ["amr_annotation"]
                    },
                    "rgi/main": {
                        "branch": "master",
                        "git_sha": "5e748ff2b0f990949081c9e49792622eb3fe9ee9",
                        "installed_by": ["amr_annotation"]
                    },
                    "seqtk/subseq": {
                        "branch": "master",
                        "git_sha": "e753770db613ce014b3c4bc94f6cba443427b726",
                        "installed_by": ["modules"]
                    },
                    "vclust/align": {
                        "branch": "master",
                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                        "installed_by": ["modules"]
                    },
                    "vclust/cluster": {
                        "branch": "master",
                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                        "installed_by": ["modules"]
                    },
                    "vclust/prefilter": {
                        "branch": "master",
                        "git_sha": "41dfa3f7c0ffabb96a6a813fe321c6d1cc5b6e46",
                        "installed_by": ["modules"]
                    }
                }
            },
            "subworkflows": {
                "nf-core": {
                    "utils_nextflow_pipeline": {
                        "branch": "master",
                        "git_sha": "05954dab2ff481bcb999f24455da29a5828af08d",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nfcore_pipeline": {
                        "branch": "master",
                        "git_sha": "65f5e638d901a51534c68fd5c1c19e8112fb4df1",
                        "installed_by": ["subworkflows"]
                    },
                    "utils_nfschema_plugin": {
                        "branch": "master",
                        "git_sha": "ff506dcada6fc826ed0c641dc2ed1e98f7345fbe",
                        "installed_by": ["subworkflows"]
                    }
                }
            }
        }
    }
}