Merge pull request #127 from EBISPOT/develop

Publication import and Submission linking

Author: ala-ebi

src/app/core/models/curationStatus.ts

@@ -0,0 +1,4 @@
+export interface CurationStatus {
+  curationStatusId: string;
+  status: string;
+}

src/app/core/models/curator.ts

@@ -0,0 +1,8 @@
+export interface Curator {
+  curatorId: string;
+  firstName: string;
+  lastName: string;
+  email: string;
+  // this is added in the front-end
+  fullName: string;
+}

src/app/core/models/publication.ts

@@ -1,3 +1,6 @@
+import { Curator } from './curator';
+import { CurationStatus } from './curationStatus';
+
 export interface Publication {
    publicationId: string;
    pmid: string;
@@ -10,4 +13,6 @@ export interface Publication {
      email: string;
    };
    status: string;
+   curationStatus: CurationStatus;
+   curator: Curator;
 }

src/app/core/models/rest/api-responses/curationStatusListApiResponse.ts

@@ -0,0 +1,8 @@
+import { ApiResponse } from './apiResponse';
+import { CurationStatus } from '../../curationStatus';
+
+export interface CurationStatusListApiResponse extends ApiResponse {
+  _embedded: {
+    curationStatusDToes: CurationStatus[];
+  };
+}

src/app/core/models/rest/api-responses/curatorListApiResponse.ts

@@ -0,0 +1,8 @@
+import { ApiResponse } from './apiResponse';
+import { Curator } from '../../curator';
+
+export interface CuratorListApiResponse extends ApiResponse {
+  _embedded: {
+    curatorDToes: Curator[];
+  };
+}

src/app/core/models/rest/api-responses/efoTraitsListApiResponse.ts

@@ -2,7 +2,6 @@ import { EfoTrait } from '../../efoTrait';
 import { ApiResponse } from './apiResponse';
 
 export interface EfoTraitsListApiResponse extends ApiResponse {
-
   _embedded: {
     efoTraits: EfoTrait[];
   };

src/app/core/models/rest/api-responses/epmcImportResult.ts

@@ -0,0 +1,7 @@
+import { Publication } from '../../publication';
+
+export interface EpmcImportResult {
+  publicationDto: Publication;
+  pmid: string;
+  status: string;
+}

src/app/core/models/rest/api-responses/publicationListApiResponse.ts

@@ -3,6 +3,6 @@ import { Publication } from '../../publication';
 
 export interface PublicationListApiResponse extends ApiResponse {
   _embedded: {
-    solrPublicationDToes: Publication[]
+    publications: Publication[]
   };
 }

src/app/core/models/submissionMatchingReport.ts

@@ -0,0 +1,9 @@
+export interface SubmissionMatchingReport {
+  submissionID: string;
+  pubMedID: string;
+  author: string;
+  doi: string;
+  cosScore: string;
+  levDistance: string;
+  jwScore: string;
+}

src/app/core/services/auth.service.ts

@@ -19,6 +19,9 @@ export class AuthService {
   }
 
   isCurator() {
+    if (environment.WHITELISTED_CURATORS.indexOf(this.getDecodedToken()?.email) > -1) {
+      return true;
+    }
     return this.getDecodedToken()?.domains?.indexOf('self.GWAS_Curator') > -1;
   }