Logging at info level for sssom2json

Author: henrietteharmse

oxo2-dataload/oxo2-sssom2json/src/main/java/uk/ac/ebi/spot/oxo/sssom2json/parser/TSV2JSON.java

@@ -73,30 +73,6 @@ public static void processDirectory(String directory, String mappingSetOutputDir
         }
     }
 
-//    private static void updateCurieToEntityDetails(Set<SSSOM2JSON.EntityDetails> curieToEntityDetailsSet,
-//                                                   Mapping mapping) {
-//       addDetailsForEntity(mapping.subjectId(), mapping.subjectIRI(), mapping.subjectLabel(), curieToEntityDetailsSet);
-//       addDetailsForEntity(mapping.predicateId(), mapping.predicateIRI(), mapping.predicateLabel(), curieToEntityDetailsSet);
-//       addDetailsForEntity(mapping.objectId(), mapping.objectIRI(), mapping.objectLabel(), curieToEntityDetailsSet);
-//    }
-
-//    private static void addDetailsForEntity(Optional<EntityReference> entityReference,
-//                                                                Optional<Uri> uri, Optional<String> label,
-//                                                                Set<SSSOM2JSON.EntityDetails> curieToEntityDetailsSet) {
-//        SSSOM2JSON.EntityDetails entityDetails = new SSSOM2JSON.EntityDetails();
-//
-//        if (uri.isPresent() && StringUtils.isURIValid(uri.get().asStringIRI()))
-//            entityDetails.setIri(uri.get().asStringIRI());
-//        else
-//            return;
-//
-//        if (entityReference.isPresent())
-//            entityDetails.setCurie(entityReference.get().getDataAsString());
-//        if (label.isPresent())
-//            entityDetails.setLabel(label.get());
-//
-//        curieToEntityDetailsSet.add(entityDetails);
-//    }
 
     private static void writeJSONFile(MappingSet mappingSet, String mappingSetOutputDirectory,
                                       String mappingsOutputDirectory) {

oxo2-dataload/oxo2-sssom2json/src/main/resources/logback.xml

@@ -7,7 +7,7 @@
         </encoder>
     </appender>
 
-    <logger name="uk.ac.ebi.spot.oxo" level="error"/>
+    <logger name="uk.ac.ebi.spot.oxo" level="info"/>
     <logger name="com.fasterxml.jackson" level="error" />
     <root level="info">
         <appender-ref ref="STDOUT" />