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convert_gvf_to_vcf/convertGVFtoVCF.py

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@@ -590,7 +590,9 @@ def generate_vcf_metainformation(lines_custom_unstructured, gvf_pragmas, gvf_non
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sample_names.append(sample_name)
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else:
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print("Skipping unknown non-essential GVF pragma:", non_essential_pragma)
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print("Total number of samples in this VCF: ", len(sample_names))
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for pragma in pragmas_to_add:
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if pragma not in unique_pragmas_to_add:
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unique_pragmas_to_add.append(pragma)

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