Fix tests

Author: tcezard

tests/test_convert_gvf_to_vcf.py

@@ -166,6 +166,7 @@ def test_generate_vcf_header_line(self):
         vcf_data_lines, list_of_vcf_objects = gvf_features_to_vcf_objects(gvf_lines_obj_list,
                                                                           dgva_attribute_dict,
                                                                           gvf_attribute_dict,
+                                                                          self.assembly,
                                                                           lines_custom_structured,
                                                                           lines_standard_ALT,
                                                                           lines_standard_INFO,
@@ -204,6 +205,7 @@ def test_populate_sample_formats(self):
         vcf_data_lines, list_of_vcf_objects = gvf_features_to_vcf_objects(gvf_lines_obj_list,
                                                                           dgva_attribute_dict,
                                                                           gvf_attribute_dict,
+                                                                          self.assembly,
                                                                           lines_custom_structured,
                                                                           lines_standard_ALT,
                                                                           lines_standard_INFO,
@@ -242,6 +244,7 @@ def test_format_sample_values(self):
         vcf_data_lines, list_of_vcf_objects = gvf_features_to_vcf_objects(gvf_lines_obj_list,
                                                                           dgva_attribute_dict,
                                                                           gvf_attribute_dict,
+                                                                          self.assembly,
                                                                           lines_custom_structured,
                                                                           lines_standard_ALT,
                                                                           lines_standard_INFO,