Merge pull request #9 from cyenyxe/hotfix/symbolic-alt-ids

pabarcgar · pabarcgar · commit 4774fea6e62f · 2016-05-06T11:46:52.000+01:00
Fixed search of symbolic ALT IDs in variants/info web service
diff --git a/eva-server/src/main/java/uk/ac/ebi/variation/eva/server/ws/VariantWSServer.java b/eva-server/src/main/java/uk/ac/ebi/variation/eva/server/ws/VariantWSServer.java
@@ -81,7 +81,7 @@ public Response getVariantById(@PathParam("variantId") String variantId,
             Region region = new Region(parts[0], Integer.parseInt(parts[1]), Integer.parseInt(parts[1]));
             queryOptions.put("reference", parts[2]);
             if (parts.length > 3) {
-                queryOptions.put("alternate", parts[3]);
+                queryOptions.put("alternate", String.join(":", Arrays.copyOfRange(parts, 3, parts.length)));
             }
 
             return createOkResponse(variantMongoDbAdaptor.getAllVariantsByRegion(region, queryOptions));

Original file line number	Diff line number	Diff line change
`@@ -81,7 +81,7 @@ public Response getVariantById(@PathParam("variantId") String variantId,`
`81`	`81`	`Region region = new Region(parts[0], Integer.parseInt(parts[1]), Integer.parseInt(parts[1]));`
`82`	`82`	`queryOptions.put("reference", parts[2]);`
`83`	`83`	`if (parts.length > 3) {`
`84`		`- queryOptions.put("alternate", parts[3]);`
	`84`	`+ queryOptions.put("alternate", String.join(":", Arrays.copyOfRange(parts, 3, parts.length)));`
`85`	`85`	`}`
`86`	`86`
`87`	`87`	`return createOkResponse(variantMongoDbAdaptor.getAllVariantsByRegion(region, queryOptions));`