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| name: Build | |
| on: | |
| pull_request: | |
| branches: | |
| - master | |
| push: | |
| branches: | |
| - master | |
| tags: | |
| - '*' | |
| jobs: | |
| ### Linux build | |
| linux_build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: build static | |
| run: | | |
| docker build -t debian_static -f docker/Dockerfile_debian_static . | |
| docker run --rm -v $(pwd):/app --user $UID -v $(pwd):/app debian_static docker/build_static.sh | |
| - name: test | |
| run: | | |
| ./build/bin/test_validation_suite | |
| - name: Rename release files | |
| run: | | |
| mv build/bin/vcf_validator vcf_validator_linux | |
| mv build/bin/vcf_assembly_checker vcf_assembly_checker_linux | |
| - name: Upload vcf-validator | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: vcf_validator_linux | |
| path: vcf_validator_linux | |
| - name: Upload vcf-assembly-checker | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: vcf_assembly_checker_linux | |
| path: vcf_assembly_checker_linux | |
| ### Mac OS build intel | |
| macos_build_intel: | |
| runs-on: macos-15 | |
| strategy: | |
| matrix: | |
| config: | |
| - {cc: "clang", cxx: "clang++"} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Install dependencies | |
| run: | | |
| #brew update | |
| HOMEBREW_NO_AUTO_UPDATE=1 brew install boost automake | |
| - name: Compile and test | |
| run: | | |
| mkdir build && cd build && cmake -G "Unix Makefiles" -DCMAKE_CXX_COMPILER=${{ matrix.config.cxx }} -DCMAKE_C_COMPILER=${{ matrix.config.cc }} -DCMAKE_PREFIX_PATH=$(brew --prefix) -DBoost_NO_BOOST_CMAKE=ON -DSTATIC_BUILD=OFF .. | |
| make -j2 | |
| cd .. && ./build/bin/test_validation_suite | |
| - name: Rename release files | |
| if: ${{ matrix.config.cc == 'clang' }} | |
| run: | | |
| mv build/bin/vcf_validator vcf_validator_macos_x64 | |
| mv build/bin/vcf_assembly_checker vcf_assembly_checker_macos_x64 | |
| - name: Upload vcf-validator | |
| uses: actions/upload-artifact@v4 | |
| if: ${{ matrix.config.cc == 'clang' }} | |
| with: | |
| name: vcf_validator_macos_x64 | |
| path: vcf_validator_macos_x64 | |
| - name: Upload vcf-assembly-checker | |
| uses: actions/upload-artifact@v4 | |
| if: ${{ matrix.config.cc == 'clang' }} | |
| with: | |
| name: vcf_assembly_checker_macos_x64 | |
| path: vcf_assembly_checker_macos_x64 | |
| ### Mac OS build arm | |
| macos_build_arm: | |
| runs-on: macos-14 | |
| strategy: | |
| matrix: | |
| config: | |
| - {cc: "clang", cxx: "clang++"} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Install dependencies | |
| run: | | |
| #brew update | |
| HOMEBREW_NO_AUTO_UPDATE=1 brew install boost automake libtool | |
| - name: Compile and test | |
| run: | | |
| mkdir build && cd build && cmake -G "Unix Makefiles" -DCMAKE_CXX_COMPILER=${{ matrix.config.cxx }} -DCMAKE_C_COMPILER=${{ matrix.config.cc }} -DCMAKE_PREFIX_PATH=$(brew --prefix) -DBoost_NO_BOOST_CMAKE=ON -DSTATIC_BUILD=OFF .. | |
| make -j2 | |
| cd .. && ./build/bin/test_validation_suite | |
| - name: Rename release files | |
| if: ${{ matrix.config.cc == 'clang' }} | |
| run: | | |
| mv build/bin/vcf_validator vcf_validator_macos_arm64 | |
| mv build/bin/vcf_assembly_checker vcf_assembly_checker_macos_arm64 | |
| - name: Upload vcf-validator | |
| uses: actions/upload-artifact@v4 | |
| if: ${{ matrix.config.cc == 'clang' }} | |
| with: | |
| name: vcf_validator_macos_arm64 | |
| path: vcf_validator_macos_arm64 | |
| - name: Upload vcf-assembly-checker | |
| uses: actions/upload-artifact@v4 | |
| if: ${{ matrix.config.cc == 'clang' }} | |
| with: | |
| name: vcf_assembly_checker_macos_arm64 | |
| path: vcf_assembly_checker_macos_arm64 | |
| ### Release job (tags only) | |
| create_release: | |
| if: startsWith(github.ref, 'refs/tags/') | |
| needs: [ linux_build, macos_build_intel, macos_build_arm ] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Download artifacts | |
| uses: actions/download-artifact@v4 | |
| with: | |
| path: bin | |
| - name: Draft release | |
| uses: softprops/action-gh-release@v1 | |
| with: | |
| draft: true | |
| files: ${{ github.workspace }}/bin/*/* | |
| fail_on_unmatched_files: true |